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Series GSE160616 Query DataSets for GSE160616
Status Public on Nov 01, 2021
Title Small RNA sequencing of human LDL
Organism Homo sapiens
Experiment type Non-coding RNA profiling by high throughput sequencing
Summary Adapter trimmed fastq files, non-redundant identical reads and the results of their alignment using the TIGER pipeline.
 
Overall design Total RNA extracted from density-isolated LDL were converted to cDNA using the NextFlex Small RNA Library Kit V3 and sequenced on an Illumina NextSeq500 instrument.
 
Contributor(s) Allen RM, Vickers KC
Citation(s) 36474072
Submission date Nov 02, 2020
Last update date Nov 13, 2023
Contact name Ryan M Allen
E-mail(s) ryan.m.allen@vumc.org
Phone 3146109328
Organization name Vanderbilt University Medical Center
Department Medicine
Lab Vickers
Street address 2220 Pierce Ave
City Nashville
State/province TN
ZIP/Postal code 37232
Country USA
 
Platforms (1)
GPL18573 Illumina NextSeq 500 (Homo sapiens)
Samples (20)
GSM4876038 LDL_Subject_1
GSM4876039 LDL_Subject_2
GSM4876040 LDL_Subject_3
This SubSeries is part of SuperSeries:
GSE206859 LDL delivery of microbial small RNAs drives atherosclerosis through macrophage TLR8
Relations
BioProject PRJNA673805
SRA SRP290793

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE160616_Geo_Allen_AllTaskReads_Summary.csv.gz 1.7 Kb (ftp)(http) CSV
GSE160616_Geo_Allen_LDLsRNA_Alignment.xlsx 953.1 Kb (ftp)(http) XLSX
GSE160616_Geo_Allen_NonParallel_TaskReadsSummary.csv.gz 611 b (ftp)(http) CSV
GSE160616_RAW.tar 427.0 Mb (http)(custom) TAR (of TXT)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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