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Status |
Public on Nov 01, 2021 |
Title |
Small RNA sequencing of human LDL |
Organism |
Homo sapiens |
Experiment type |
Non-coding RNA profiling by high throughput sequencing
|
Summary |
Adapter trimmed fastq files, non-redundant identical reads and the results of their alignment using the TIGER pipeline.
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Overall design |
Total RNA extracted from density-isolated LDL were converted to cDNA using the NextFlex Small RNA Library Kit V3 and sequenced on an Illumina NextSeq500 instrument.
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Contributor(s) |
Allen RM, Vickers KC |
Citation(s) |
36474072 |
|
Submission date |
Nov 02, 2020 |
Last update date |
Nov 13, 2023 |
Contact name |
Ryan M Allen |
E-mail(s) |
ryan.m.allen@vumc.org
|
Phone |
3146109328
|
Organization name |
Vanderbilt University Medical Center
|
Department |
Medicine
|
Lab |
Vickers
|
Street address |
2220 Pierce Ave
|
City |
Nashville |
State/province |
TN |
ZIP/Postal code |
37232 |
Country |
USA |
|
|
Platforms (1) |
GPL18573 |
Illumina NextSeq 500 (Homo sapiens) |
|
Samples (20)
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This SubSeries is part of SuperSeries: |
GSE206859 |
LDL delivery of microbial small RNAs drives atherosclerosis through macrophage TLR8 |
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Relations |
BioProject |
PRJNA673805 |
SRA |
SRP290793 |