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Series GSE160150 Query DataSets for GSE160150
Status Public on Oct 27, 2020
Title Identification of novel MeCP2 cancer-associated target genes and post-translational modifications
Organism Homo sapiens
Experiment type Expression profiling by high throughput sequencing
Genome binding/occupancy profiling by high throughput sequencing
Summary The goal of this study is to identify novel target genes of MeCP2 in two breast cancer cell lines.
 
Overall design RNA-seq: MDA-MB-468 non-target control (WT) and MecP2 KD (sh1 and sh3).
ChIP-seq: MeCP2 ChIP-Seq in MDA-MB-468 and MCF7 cell lines.
 
Contributor(s) Pruitt K
Citation(s) 33363010
BioProject PRJNA667107
Submission date Oct 26, 2020
Last update date Jan 04, 2021
Contact name Kevin Pruitt
E-mail(s) kevin.pruitt@ttuhsc.edu
Phone 806-743-2523
Organization name Texas Tech University Health Sciences Center
Department Immunology & Molecular Microbiology
Street address 3601 4th Street
City Lubbock
State/province Texas
ZIP/Postal code 79430-6591
Country USA
 
Platforms (2)
GPL18460 Illumina HiSeq 1500 (Homo sapiens)
GPL24676 Illumina NovaSeq 6000 (Homo sapiens)
Samples (22)
GSM4861400 MDA-MB-468_NTC, 1-L001
GSM4861401 MDA-MB-468_NTC, 1-L002
GSM4861402 MDA-MB-468_NTC, 2-L001
Relations
SRA SRP286244

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE160150_468_NTC_vs_468_MeCP2_sh1.xlsx 82.0 Kb (ftp)(http) XLSX
GSE160150_468_NTC_vs_468_MeCP2_sh3.xlsx 80.0 Kb (ftp)(http) XLSX
GSE160150_RAW.tar 796.6 Mb (http)(custom) TAR (of BIGWIG)
GSE160150_Samples_RPKM.xlsx 1.3 Mb (ftp)(http) XLSX
SRA Run SelectorHelp
Raw data are available in SRA
Processed data are available on Series record
Processed data provided as supplementary file

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