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GEO accession:
Series GSE158205
Query DataSets for GSE158205
Status
Public on Mar 08, 2021
Title
Differential chromatin binding of the lung lineage transcription factor NKX2-1 resolves opposing murine alveolar cell fates in vivo
Organism
Mus musculus
Experiment type
Expression profiling by high throughput sequencing
Genome binding/occupancy profiling by high throughput sequencing
Summary
This SuperSeries is composed of the SubSeries listed below.
Overall design
Refer to individual Series
Citation(s)
33947861
,
38755149
Submission date
Sep 18, 2020
Last update date
May 29, 2024
Contact name
Danielle R. Little
E-mail(s)
Danielle.Little@stjude.org
Phone
9015953487
Organization name
St. Jude Children's Research Hospital
Department
Developmental Neurobiology
Lab
Michael Dyer
Street address
262 Danny Thomas Pl Rm D2031
City
Memphis
State/province
Tennessee
ZIP/Postal code
38105
Country
USA
Platforms (2)
GPL19057
Illumina NextSeq 500 (Mus musculus)
GPL24247
Illumina NovaSeq 6000 (Mus musculus)
Samples (78)
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GSM4785405
1_Rtkn2_AT1_C
GSM4785406
2_Rtkn2_AT1_C
GSM4785407
1_NKX2-1_Rtkn2_AT1_M
GSM4785408
2_NKX2-1_Rtkn2_AT1_M
GSM4785409
3_NKX2-1_Rtkn2_AT1_M
GSM4785410
1_Sftpc_AT2_C
GSM4785411
2_Sftpc_AT2_C
GSM4785412
1_NKX2-1_Sftpc_AT2_M
GSM4785413
2_NKX2-1_Sftpc_AT2_M
GSM4795027
Mutant E18.5 YT Sox9 scRNAseq
GSM4795028
Control E18.5 scRNAseq
GSM4795029
Mutant P15 YT Wnt3a scRNAseq
GSM4795030
Control P15 scRNAseq
GSM4795031
Control E14.5 scRNAseq
GSM4795032
Control E16.5 scRNAseq
GSM4795033
Control P4 scRNAseq
GSM4795034
Control P6 scRNAseq
GSM4795035
Control P7 scRNAseq
GSM4795036
Control P8 scRNAseq
GSM4795037
Control P10 scRNAseq
GSM4795038
Control P20 scRNAseq
GSM4795039
Control 10-wk scRNAseq
GSM4795040
Control 15-wk scRNAseq
GSM4795059
7wk_scATAC
GSM4795138
E14-5 whole lung NKX2-1 ChIP-seq rep 1
GSM4795139
E14-5 whole lung NKX2-1 ChIP-seq rep 2
GSM4795140
E18-5 whole lung NKX2-1 ChIP-seq rep 1
GSM4795141
E18-5 whole lung NKX2-1 ChIP-seq rep 2
GSM4795142
E18-5 YT Sox9 CreER whole lung NKX2-1 ChIP-seq rep 1
GSM4795143
E18-5 YT Sox9 CreER whole lung NKX2-1 ChIP-seq rep 2
GSM4795144
P7 AT1 cell NKX2-1 ChIP-seq rep 1
GSM4795145
P7 AT1 cell NKX2-1 ChIP-seq rep 2
GSM4795146
P15 AT1 cell NKX2-1 ChIP-seq rep 1
GSM4795147
P15 AT1 cell NKX2-1 ChIP-seq rep 2
GSM4795148
P15 YT Wnt3a AT1 cell NKX2-1 ChIP-seq rep 1
GSM4795149
P15 YT Wnt3a AT1 cell NKX2-1 ChIP-seq rep 2
GSM4795150
10wk AT1 cell NKX2-1 ChIP-seq rep 1
GSM4795151
10wk AT1 cell NKX2-1 ChIP-seq rep 2
GSM4795152
P7 AT2 cell NKX2-1 ChIP-seq rep 1
GSM4795153
P7 AT2 cell NKX2-1 ChIP-seq rep 2
GSM4795154
10wk AT2 cell NKX2-1 ChIP-seq rep 1
GSM4795155
10wk AT2 cell NKX2-1 ChIP-seq rep 2
GSM4795156
P10 whole lung H3K4me3 ChIP-seq
GSM4795157
P7 AT1 cell H3K4me3 ChIP-seq rep 1
GSM4795158
P7 AT1 cell H3K4me3 ChIP-seq rep 2
GSM4795159
P7 AT2 cell H3K4me3 ChIP-seq rep 1
GSM4795160
P7 AT2 cell H3K4me3 ChIP-seq rep 2
GSM4795161
10wk AT1 cell H3K4me3 ChIP-seq rep 1
GSM4795162
10wk AT1 cell H3K4me3 ChIP-seq rep 2
GSM4795163
10wk AT1 cell H3K27ac ChIP-seq rep 1
GSM4795164
10wk AT1 cell H3K27ac ChIP-seq rep 2
GSM4795165
10wk AT1 cell H3K4me1 ChIP-seq rep 1
GSM4795166
10wk AT1 cell H3K4me1 ChIP-seq rep 2
GSM4795167
10wk AT2 cell H3K4me3 ChIP-seq rep 1
GSM4795168
10wk AT2 cell H3K4me3 ChIP-seq rep 2
GSM4795169
10wk AT2 cell H3K27ac ChIP-seq rep 1
GSM4795170
10wk AT2 cell H3K27ac ChIP-seq rep 2
GSM4795171
10wk AT2 cell H3K4me1 ChIP-seq rep 1
GSM4795172
10wk AT2 cell H3K4me1 ChIP-seq rep 2
GSM4795173
E14-5 whole lung input rep 1
GSM4795174
E14-5 whole lung input rep 2
GSM4795175
E18-5 whole lung input rep 1
GSM4795176
E18-5 whole lung input rep 2
GSM4795177
E18-5 YT Sox9 CreER whole lung input rep 1
GSM4795178
E18-5 YT Sox9 CreER whole lung input rep 2
GSM4795179
P7 AT1 cell NKX2-1 input rep 1
GSM4795180
P7 AT1 cell NKX2-1 input rep 2
GSM4795181
P15 AT1 cell input rep 1
GSM4795182
P15 AT1 cell input rep 2
GSM4795183
P15 YT Wnt3a AT1 cell input rep 1
GSM4795184
P15 YT Wnt3a AT1 cell input rep 2
GSM4795185
10wk AT1 cell input rep 1
GSM4795186
10wk AT1 cell input rep 2
GSM4795187
P7 AT2 cell input rep 1
GSM4795188
P7 AT2 cell input rep 2
GSM4795189
10wk AT2 cell input rep 1
GSM4795190
10wk AT2 cell input rep 2
GSM4795191
P10 whole lung input rep 1
This SuperSeries is composed of the following SubSeries:
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More...
GSE158024
Differential chromatin binding of the lung lineage transcription factor NKX2-1 resolves opposing murine alveolar cell fates in vivo [ATAC-seq]
GSE158192
Differential chromatin binding of the lung lineage transcription factor NKX2-1 resolves opposing murine alveolar cell fates in vivo [scRNA-Seq]
GSE158196
Differential chromatin binding of the lung lineage transcription factor NKX2-1 resolves opposing murine alveolar cell fates in vivo [scATAC-Seq]
GSE158201
Differential chromatin binding of the lung lineage transcription factor NKX2-1 resolves opposing murine alveolar cell fates in vivo [ChIP-seq]
Relations
BioProject
PRJNA664357
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GSE158205_RAW.tar
13.3 Gb
(http)
(custom)
TAR (of BED, BEDGRAPH, BROADPEAK, CLOUPE, CSV, H5, NARROWPEAK, TBI, TSV)
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