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| Status |
Public on Oct 10, 2020 |
| Title |
Single-cell RNAsequencing of the ventral rhombomere 1 of the developing mouse [10X Genomics] |
| Organism |
Mus musculus |
| Experiment type |
Expression profiling by high throughput sequencing
|
| Summary |
Sequencing of the mouse ventral rhombomere 1 tissues and cells to characterize the Tal1-dependent and -independent neuronal precursor groups. The data allowed to describe the cell types in the R1 brain region, and map gene expression dynamics during bifurcation of the GABAergic and glutamatergic lineagesOur results provide a framework for understanding the development of cellular diversity in the tegmental nuclei.
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| Overall design |
Unlabelled single cells were dissociated from selected brain regions and collected on 10xgenomics Chromium platform.
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| Contributor(s) |
Partanen J, Achim K, Borshagovski D, Samir-Sadik O |
| Citation(s) |
33053343 |
| |
| Submission date |
Sep 15, 2020 |
| Last update date |
Jan 10, 2021 |
| Contact name |
Kaia Achim |
| E-mail(s) |
kaia.achim@helsinki.fi
|
| Organization name |
University of Helsinki
|
| Department |
Faculty of Biological and Environmental Sciences
|
| Street address |
Viikinkaari 9
|
| City |
Helsinki |
| ZIP/Postal code |
00014 |
| Country |
Finland |
| |
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| Platforms (1) |
| GPL24247 |
Illumina NovaSeq 6000 (Mus musculus) |
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| Samples (7)
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| This SubSeries is part of SuperSeries: |
| GSE157964 |
RNA sequencing of the ventral rhombomere 1 of the developing mouse |
|
| Relations |
| BioProject |
PRJNA663556 |
| SRA |
SRP282448 |
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