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Series GSE157354 Query DataSets for GSE157354
Status Public on Feb 15, 2021
Title Interspecies Chimeric Conditions Affect the Developmental Rate of Human Pluripotent Stem Cells
Organisms Homo sapiens; Mus musculus
Experiment type Expression profiling by high throughput sequencing
Summary We performed RNA sequencing experiments on chimeric samples of mixed human and mouse pluripotent stem cells over time courses of neural differentiation.
Overall design Mixed mouse and human pluripotent stem cells were differentiated in vitro and periodically sampled. Submission 399 series has four sets of samples, each sampling a 33 day timecourse. Submissions 441 and 464 sample every day for the first eight days, and every two days thereafter out to forty-two days. Sequenced transcripts were aligned to a combined human-mouse transcriptome.
Contributor(s) Brown J, Barry C, Schmitz MT, Argus C, Bolin JM, Schwartz MP, Van Aartsen A, Steill J, Swanson S, Stewart R, Thomson JA, Kendziorski C
Citation(s) 33647016
Submission date Sep 02, 2020
Last update date May 17, 2021
Contact name Jared Brown
Organization name Dana Farber Cancer Institute
Department Data Science
Lab Irizarry
Street address Mailtop CLS11007, 450 Brookline Ave
City Boston
State/province MA
ZIP/Postal code 02215
Country USA
Platforms (3)
GPL16791 Illumina HiSeq 2500 (Homo sapiens)
GPL17021 Illumina HiSeq 2500 (Mus musculus)
GPL22245 Illumina HiSeq 2500 (Homo sapiens; Mus musculus)
Samples (1067)
GSM4762464 0_percent_d0_Hsap_Mmul_Chimera
GSM4762465 0_percent_d0.1_Hsap_Mmul_Chimera
GSM4762466 0_percent_d1_Hsap_Mmul_Chimera
BioProject PRJNA661047
SRA SRP279758

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Supplementary file Size Download File type/resource 2.6 Mb (ftp)(http) TAB 3.1 Mb (ftp)(http) TAB 2.8 Mb (ftp)(http) TAB 9.0 Mb (ftp)(http) TAB 10.0 Mb (ftp)(http) TAB 10.8 Mb (ftp)(http) TAB 23.8 Mb (ftp)(http) TAB 28.7 Mb (ftp)(http) TAB 30.6 Mb (ftp)(http) TAB
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