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| Status |
Public on Jul 18, 2024 |
| Title |
TMK4-mediated Phosphorylation of FIP37 Regulates Auxin-triggered N6-methyladenosine mRNA Modification of Auxin Biosynthetic Genes in Arabidopsis |
| Organism |
Arabidopsis thaliana |
| Experiment type |
Methylation profiling by high throughput sequencing
Expression profiling by high throughput sequencing
Other
|
| Summary |
Using m6A-seq, RNA-seq, we show that auxin can induce transcriptome-wide m6A reprogramming.
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| Overall design |
This series includes samples for two experiments: m6A-seq (two biological replicates for mock and NAA treated 15-day-old wild-type seedlings plus input controls); RNA-seq (three biological replicates for mock and NAA treated 15-day-old wild-type.).
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| |
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| Contributor(s) |
Li B, Xie C, Li D, He C, Xu T, Zhao X, Zhu F, Zhou Q, Li X, Liu X |
| Citation missing |
Has this study been published? Please login to update or notify GEO. |
| |
| Submission date |
Aug 20, 2020 |
| Last update date |
Jul 18, 2024 |
| Contact name |
Chongsheng He |
| E-mail(s) |
chongshenghe@outlook.com
|
| Phone |
+8619198053436
|
| Organization name |
Hunan university
|
| Street address |
27 Tianma road
|
| City |
Changsha |
| State/province |
Hunan |
| ZIP/Postal code |
410082 |
| Country |
China |
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| Platforms (2) |
| GPL21785 |
Illumina HiSeq 4000 (Arabidopsis thaliana) |
| GPL26208 |
Illumina NovaSeq 6000 (Arabidopsis thaliana) |
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| Samples (32)
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| Relations |
| BioProject |
PRJNA658355 |
| SRA |
SRP278233 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSE156570_IP.b1_peaks.txt.gz |
173.5 Kb |
(ftp)(http) |
TXT |
| GSE156570_IP.b2_peaks.txt.gz |
179.6 Kb |
(ftp)(http) |
TXT |
| GSE156570_NAA.IP.b1_peaks.txt.gz |
133.5 Kb |
(ftp)(http) |
TXT |
| GSE156570_NAA.IP.b2_peaks.txt.gz |
160.7 Kb |
(ftp)(http) |
TXT |
| GSE156570_RPKMs.csv.gz |
1.1 Mb |
(ftp)(http) |
CSV |
| GSE156570_WT.IP.input.subtract.bw |
8.1 Mb |
(ftp)(http) |
BW |
| GSE156570_WT.NAA.IP.input.subtract.bw |
7.9 Mb |
(ftp)(http) |
BW |
| GSE156570_fip373A_peaks.xlsx |
445.1 Kb |
(ftp)(http) |
XLSX |
| GSE156570_fip37_peaks.xlsx |
491.3 Kb |
(ftp)(http) |
XLSX |
| GSE156570_tmk4_peaks.xlsx |
199.2 Kb |
(ftp)(http) |
XLSX |
SRA Run Selector |
| Raw data are available in SRA |
| Processed data are available on Series record |
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