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GEO accession:
Series GSE156409
Query DataSets for GSE156409
Status
Public on Jul 15, 2021
Title
Age-associated cryptic transcription in mammalian stem cells is linked to permissive chromatin at cryptic promoters
Organisms
Homo sapiens
;
Mus musculus
Experiment type
Expression profiling by high throughput sequencing
Genome binding/occupancy profiling by high throughput sequencing
Other
Methylation profiling by high throughput sequencing
Summary
This SuperSeries is composed of the SubSeries listed below.
Overall design
Refer to individual Series
Citation(s)
34746802
Submission date
Aug 18, 2020
Last update date
Nov 10, 2021
Contact name
Weiwei Dang
E-mail(s)
weiwei.dang@bcm.edu
Organization name
Baylor College of Medicine
Street address
1 Baylor Plaza
City
Houston
State/province
Texas
ZIP/Postal code
77030
Country
USA
Platforms (2)
GPL16791
Illumina HiSeq 2500 (Homo sapiens)
GPL17021
Illumina HiSeq 2500 (Mus musculus)
Samples (52)
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GSM4730280
ucMSC - H3 total - Old - Batch1
GSM4730281
ucMSC - H3 total - Old - Batch2
GSM4730282
ucMSC - H3K27ac - Old - Batch1
GSM4730283
ucMSC - H3K27me3 - Old - Batch2
GSM4730284
ucMSC - H3K36me3 - Old - Batch1
GSM4730285
ucMSC - H3K4me1 - Old - Batch1
GSM4730286
ucMSC - H3K4me3 - Old - Batch1
GSM4730287
ucMSC - H3K9me3- Old - Batch2
GSM4730288
ucMSC - input DNA - Old - Batch1
GSM4730289
ucMSC - input DNA - Old - Batch2
GSM4730290
ucMSC - TBP - Old - Batch1
GSM4730291
ucMSC - H3 total - Young - Batch1
GSM4730292
ucMSC - H3 total - Young - Batch2
GSM4730293
ucMSC - H3K27ac - Young - Batch1
GSM4730294
ucMSC - H3K27me3 - Young - Batch2
GSM4730295
ucMSC - H3K36me3 - Young - Batch1
GSM4730296
ucMSC - H3K4me1 - Young - Batch1
GSM4730297
ucMSC - H3K4me3- Young - Batch1
GSM4730298
ucMSC - H3K9me3- Young - Batch2
GSM4730299
ucMSC - input DNA - Young - Batch1
GSM4730300
ucMSC - input DNA - Young - Batch2
GSM4730301
ucMSC - TBP - Young - Batch1
GSM4730302
ucMSC-RNA-seq-Young
GSM4730303
ucMSC-RNA-seq-Old
GSM4730304
mouse-female-old-aNSC-rep1
GSM4730305
mouse-female-old-qNSC-rep1
GSM4730306
mouse-female-old-aNSC-rep2
GSM4730307
mouse-female-old-qNSC-rep2
GSM4730308
mouse-female-young-aNSC-rep1
GSM4730309
mouse-female-young-qNSC-rep1
GSM4730310
mouse-female-young-aNSC-rep2
GSM4730311
mouse-female-young-qNSC-rep2
GSM4730312
mouse-male-old-aNSC-rep1
GSM4730313
mouse-male-old-qNSC-rep1
GSM4730314
mouse-male-young-aNSC-rep1
GSM4730315
mouse-male-young-qNSC-rep1
GSM4730316
ucMSC-TL-Seq-Young
GSM4730317
ucMSC-TL-Seq-Old
GSM4730318
ucMSC-TL-Seq-NegativeControl
GSM5124498
ucMSC-RNA-seq-Young-rep2
GSM5124499
ucMSC-RNA-seq-Old-rep2
GSM5124500
ucMSC-RNA-seq-Young-rep3
GSM5124501
ucMSC-RNA-seq-Old-rep3
GSM5126760
Young-MSC-WGBS
GSM5126762
Old-MSC-WGBS
GSM5127043
Young-CMS-seq-IP-rep1
GSM5127044
Young-CMS-seq-IP-rep2
GSM5127046
Old-CMS-seq-IP-rep1
GSM5127047
Old-CMS-seq-IP-rep2
GSM5127048
CMS-seq-INPUT
GSM5261293
ucMSC - Pol2 - Old - Batch1
GSM5261294
ucMSC - Pol2 - Young - Batch1
This SuperSeries is composed of the following SubSeries:
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GSE156406
Age-associated cryptic transcription in mammalian stem cells is linked to permissive chromatin at cryptic promoters (ChIP-Seq)
GSE156407
Age-associated cryptic transcription in mammalian stem cells is linked to permissive chromatin at cryptic promoters (RNA-Seq)
GSE156408
Age-associated cryptic transcription in mammalian stem cells is linked to permissive chromatin at cryptic promoters (TL-Seq)
GSE168063
Age-associated cryptic transcription in mammalian stem cells is linked to permissive chromatin at cryptic promoters [WGBS]
GSE168064
Age-associated cryptic transcription in mammalian stem cells is linked to permissive chromatin at cryptic promoters [CMS-Seq]
Relations
BioProject
PRJNA657841
Download family
Format
SOFT formatted family file(s)
SOFT
MINiML formatted family file(s)
MINiML
Series Matrix File(s)
TXT
Supplementary file
Size
Download
File type/resource
GSE156409_RAW.tar
12.3 Gb
(http)
(custom)
TAR (of BED, BW, COV, TXT)
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