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GEO accession:
Series GSE155002
Query DataSets for GSE155002
Status
Public on Oct 25, 2021
Title
Retinoic acid rewires the adrenergic core regulatory circuitry of neuroblastoma but can be subverted by enhancer hijacking of MYC or MYCN
Organism
Homo sapiens
Experiment type
Expression profiling by high throughput sequencing
Genome binding/occupancy profiling by high throughput sequencing
Summary
This SuperSeries is composed of the SubSeries listed below.
Overall design
Refer to individual Series
Citation(s)
34669465
Submission date
Jul 23, 2020
Last update date
Nov 05, 2021
Contact name
Richard A Young
E-mail(s)
young_computation@wi.mit.edu
Phone
617-258-5219
Organization name
Whitehead Institute for Biomedical Research
Lab
Young Lab
Street address
9 Cambridge Center
City
Cambridge
State/province
MA
ZIP/Postal code
02142
Country
USA
Platforms (2)
GPL18573
Illumina NextSeq 500 (Homo sapiens)
GPL24676
Illumina NovaSeq 6000 (Homo sapiens)
Samples (49)
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GSM4693004
BE2C_ATRA_12d_Input_MWZ5969 [Lab: Look]
GSM4693005
BE2C_ATRA_12d_RARA_MWZ5969 [Lab: Look]
GSM4693006
BE2C_ATRA_H3K27ac_MWZ7304 [Lab: Look]
GSM4693007
BE2C_ATRA_H3K27me3_MWZ7304 [Lab: Look]
GSM4693008
BE2C_ATRA_input_MWZ6821 [Lab: Look]
GSM4693009
BE2C_ATRA_Input_MWZ7304 [Lab: Look]
GSM4693010
BE2C_ATRA_MEIS1_MWZ6821 [Lab: Look]
GSM4693011
BE2C_Ctrl_H3K27ac_MWZ7304 [Lab: Look]
GSM4693012
BE2C_Ctrl_H3K27me3_MWZ7304 [Lab: Look]
GSM4693013
BE2C_Ctrl_Input_MWZ7304 [Lab: Look]
GSM4693014
NBLS_ATRA_H3K27ac_MZ_180616 [Lab: Look]
GSM4693015
NBLS_ATRA_input_MZ_180616 [Lab: Look]
GSM4693016
NBLS_DMSO_H3K27ac_MZ_180616 [Lab: Look]
GSM4693017
NBLS_DMSO_input_MZ_180616 [Lab: Look]
GSM4693018
NGP_ATRA_12d_H3K27ac_MWZ5969 [Lab: Look]
GSM4693019
NGP_ATRA_12d_Input_MWZ5969 [Lab: Look]
GSM4693020
NGP_ATRA_12d_MEIS1_MWZ5969 [Lab: Look]
GSM4693021
NGP_ATRA_12d_RARA_MWZ5969 [Lab: Look]
GSM4693022
NGP_Ctrl_H3K27ac_MWZ5969 [Lab: Look]
GSM4693023
NGP_Ctrl_Input_MWZ5969 [Lab: Look]
GSM4693024
BE2C_ATRA_1
GSM4693025
BE2C_ATRA_2
GSM4693026
BE2C_ATRA_3
GSM4693027
BE2C_DMSO_1
GSM4693028
BE2C_DMSO_2
GSM4693029
BE2C_DMSO_3
GSM4693030
NBLS_ATRA_1
GSM4693031
NBLS_ATRA_2
GSM4693032
NBLS_ATRA_3
GSM4693033
NBLS_DMSO_1
GSM4693034
NBLS_DMSO_2
GSM4693035
NBLS_DMSO_3
GSM4693036
NGP_ATRA_1
GSM4693037
NGP_ATRA_2
GSM4693038
NGP_ATRA_3
GSM4693039
NGP_DMSO_1
GSM4693040
NGP_DMSO_2
GSM4693041
NGP_DMSO_3
GSM5210637
BE2C Ctrl RARA [Lab: Look]
GSM5211094
BE2C_DMSO_IgG_MWZ8376
GSM5211095
BE2C_DMSO_MEIS1_MWZ8376
GSM5211096
BE2C_ATRA_SOX4_MWZ8376
GSM5211097
BE2C_ATRA_PHOX2B_MWZ8376
GSM5211098
BE2C_DMSO_SOX4_MWZ8376
GSM5211099
BE2C_ATRA_GATA3_MWZ8376
GSM5211100
BE2C_DMSO_GATA3_MWZ8376
GSM5211101
BE2C_ATRA_MEIS1_MWZ8376
GSM5211102
BE2C_ATRA_IgG_MWZ8376
GSM5211103
BE2C_DMSO_PHOX2B_MWZ8376
This SuperSeries is composed of the following SubSeries:
GSE154999
Retinoic acid rewires the adrenergic core regulatory circuitry of neuroblastoma but can be subverted by enhancer hijacking of MYC or MYCN (ChIP-Seq)
GSE155000
Retinoic acid rewires the adrenergic core regulatory circuitry of neuroblastoma but can be subverted by enhancer hijacking of MYC or MYCN (RNA-Seq)
GSE169616
Retinoic acid rewires the adrenergic core regulatory circuitry of neuroblastoma but can be subverted by enhancer hijacking of MYC or MYCN (CUT&RUN-Seq)
Relations
BioProject
PRJNA648124
Download family
Format
SOFT formatted family file(s)
SOFT
MINiML formatted family file(s)
MINiML
Series Matrix File(s)
TXT
Supplementary file
Size
Download
File type/resource
GSE155002_RAW.tar
3.6 Gb
(http)
(custom)
TAR (of BW, TXT, WIG)
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