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Series GSE153979 Query DataSets for GSE153979
Status Public on Dec 22, 2021
Title Amplification of Germ Cells through Parthenogenesis Faithfully Maintain Genomic Imprinting [RRBS]
Organism Mus musculus
Experiment type Methylation profiling by high throughput sequencing
Summary We asked whether oocyte number could be amplified through parthenogenesis of mouse oocytes, without requiring creation of a paternal genome and a genetically unique genome. Parthenotes develop to a blastocyst-like stage, and from this parthenogenetic ESCs (pESCs) can be derived with high efficiency. Like ESCs, pESCs maintain unlimited self-renewal and pluripotency, as well as germline competence. Further, we demonstrate that their expression pattern of imprinted maternal genes resembles that observed in oocytes. pESCs can be directed to differentiate into primordial germ cell-like cells (PGCLCs) and form oocytes that produce fertile pups and reconstitute ovarian endocrine functions. The transcriptome and imprinting pattern of PGCLCs differentiated from pESCs more closely approximate those of in vivo produced embryonic PGCs, than PGCLCs produced from ESCs. Parthenogenesis offers a promising route for deriving PGCLCs and amplifying oocytes by faithfully maintaining maternal genes, without fertilization.
 
Overall design We performed RRBS assay to analysis the DNA methylation between female ESC and pESC, and also analysis the DNA methylation among E9.5PGC, E12.5PGC, female ESC-PGCLC and pESC-PGCLCs
 
Contributor(s) Tian C
Citation(s) 34845589
Submission date Jul 07, 2020
Last update date Dec 23, 2021
Contact name Chenglei Tian
E-mail(s) chenglei.tian@helmholtz-munich.de
Organization name Helmholtz Munich
Lab Instirution of translational stem cell research
Street address Ingolstädter Landstraße 1
City Munich
ZIP/Postal code 85764
Country Germany
 
Platforms (1)
GPL24247 Illumina NovaSeq 6000 (Mus musculus)
Samples (12)
GSM4661310 Female ESC 1
GSM4661311 Female ESC 2
GSM4661312 pESC 1
This SubSeries is part of SuperSeries:
GSE154145 Amplification of Germ Cells through Parthenogenesis Faithfully Maintain Genomic Imprinting
Relations
BioProject PRJNA644638
SRA SRP270827

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE153979_RAW.tar 24.6 Mb (http)(custom) TAR (of TXT)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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