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Series GSE153536 Query DataSets for GSE153536
Status Public on Jan 16, 2023
Title The cis-Regulatory Landscape of Cardiac Rhythm
Organism Mus musculus
Experiment type Expression profiling by high throughput sequencing
Summary Genome-wide identification of gene regulatory networks for murine cardiac conduction system
Overall design Focusing on the primary pacemaker (Sino-Atrial Node(SAN)) of the heart, we used Shox2-KI-Cre mouse line to perform cellular analysis of SAN tissue. Utilizing this SAN-specific mouse model, we performed Single cell RNA sequencing (scRNA-Seq) on neonatal (P4) Shox2-Cre/+; R26 tdTomato/+ mice to guide our single-cell atlas of the SAN.
Contributor(s) Bhattacharyya S, Goetsch S, Duan J, Li B
Submission date Jun 30, 2020
Last update date Jan 17, 2023
Contact name Nikhil V Munshi
Phone 2146484001
Organization name UT Southwestern Medical Center
Department Internal Medicine-Cardiology
Lab NB10224
Street address 6000 Harry Hines Blvd.
City Dallas
State/province TX
ZIP/Postal code 75390
Country USA
Platforms (1)
GPL19057 Illumina NextSeq 500 (Mus musculus)
Samples (1)
GSM4646683 P4 Shox2-Cre/+; R26 tdTomato/+ mouse SAN scRNA-seq library
BioProject PRJNA643151
SRA SRP269337

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE153536_RAW.tar 14.3 Mb (http)(custom) TAR (of TXT)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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