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Series GSE151747 Query DataSets for GSE151747
Status Public on Sep 26, 2022
Title eiCLIP analysis of RBFOX2 in primary mouse hepatocytes
Organism Mus musculus
Experiment type Expression profiling by high throughput sequencing
Summary Rbfox2 is required for maintaining hepatic cholesterol levels under high fructose. Here we carry out an enhanced iCLIP (eiCLIP) protocol in order to determine the targets of Rbfox2 in primary mouse hepatocytes.
 
Overall design Primary hepatocytes from control diet mice were harvested and plated, cells were left overnight and then UV irradiated at 150mJ/cm2 before carrying out the eiCLIP protocol
 
Contributor(s) Vernia S, Wang Y, Haberman N, Paterson HA
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Submission date Jun 03, 2020
Last update date Sep 28, 2022
Contact name LMS Bioinformatics Core
E-mail(s) bioinformatics@lms.mrc.ac.uk
Organization name MRC London Institute of Medical Sciences
Department Bioinformatics Core
Street address Hammersmith Hospital Campus, Du Cane Road
City London
ZIP/Postal code W12 0NN
Country United Kingdom
 
Platforms (1)
GPL16417 Illumina MiSeq (Mus musculus)
Samples (3)
GSM4589731 eiCLIP_sample1
GSM4589732 eiCLIP_sample2
GSM4589733 eiCLIP_sample3
This SubSeries is part of SuperSeries:
GSE151753 Characterization of the role of RBFOX2 in the liver
Relations
BioProject PRJNA637084
SRA SRP265847

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE151747_RAW.tar 8.6 Mb (http)(custom) TAR (of BEDGRAPH)
GSE151747_RBFOX2-eiCLIP-rep1_2_3-sum_iMaps-paraclu_window200nt-no_rRNA-no_chr.bed.gz 717.6 Kb (ftp)(http) BED
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file
Processed data are available on Series record

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