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GEO accession:
Series GSE151724
Query DataSets for GSE151724
Status
Public on Jan 28, 2021
Title
iCLIP-seq, RNA-seq and MACE-seq studies in P19 cells
Organism
Mus musculus
Experiment type
Other
Expression profiling by high throughput sequencing
Summary
This SuperSeries is composed of the SubSeries listed below.
Overall design
Refer to individual Series
Citation(s)
33706811
Submission date
Jun 03, 2020
Last update date
Mar 16, 2021
Contact name
Michaela Müller-McNicoll
E-mail(s)
mueller-mcnicoll@bio.uni-frankfurt.de
Phone
+49 69 798 42079
Organization name
Goethe University Frankfurt
Department
Institute for Cell Biology and Neuroscience
Lab
RNA Regulation Group
Street address
Max-von-Laue-Str. 13
City
Frankfurt am Main
ZIP/Postal code
60438
Country
Germany
Platforms (2)
GPL13112
Illumina HiSeq 2000 (Mus musculus)
GPL19057
Illumina NextSeq 500 (Mus musculus)
Samples (46)
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GSM4589068
iCLIP_CPSF5_P19_noUV_CCGG_Rep1
GSM4589069
iCLIP_CPSF5_P19_sample_GGTC_Rep1
GSM4589070
iCLIP_CPSF5_P19_sample_GGTC_Rep2
GSM4589071
iCLIP_CPSF5_P19_sample_GGCA_Rep3
GSM4589072
iCLIP_CPSF5_P19_sample_GGCA_Rep4
GSM4589073
iCLIP_CPSF5_P19_sample_CGGA_Rep5
GSM4589074
iCLIP_CPSF5_P19_sample_CGGA_Rep6
GSM4589075
iCLIP_FIP1_P19_noUV_CCGG_Rep1
GSM4589076
iCLIP_FIP1_P19_sample_GGTT_Rep1
GSM4589077
iCLIP_FIP1_P19_sample_GGTT_Rep2
GSM4589078
iCLIP_FIP1_P19_sample_TTGT_Rep3
GSM4589079
iCLIP_FIP1_P19_sample_TTGT_Rep4
GSM4589080
iCLIP_FIP1_P19_sample_TATT_Rep5
GSM4589081
iCLIP_FIP1_P19_sample_CGGA_Rep6
GSM4589082
iCLIP_FIP1_P19_sample_CGGA_Rep7
GSM4589083
SRSF3_iCLIP_mm9_Rep1 [re-analysis]
GSM4589084
SRSF3_iCLIP_mm9_Rep2 [re-analysis]
GSM4589085
SRSF3_iCLIP_mm9_Rep3 [re-analysis]
GSM4589086
SRSF7_iCLIP_mm9_Rep1 [re-analysis]
GSM4589087
SRSF7_iCLIP_mm9_Rep2 [re-analysis]
GSM4589088
SRSF7_iCLIP_mm9_Rep3 [re-analysis]
GSM4589089
SRSF7_iCLIP_mm9_Rep4 [re-analysis]
GSM4589090
SRSF7_iCLIP_mm9_Rep5 [re-analysis]
GSM4589091
SRSF7_iCLIP_mm9_Rep6 [re-analysis]
GSM4589092
RNA-seq_SRSF3.7_Ctrl_rep1
GSM4589093
RNA-seq_SRSF3.7_Ctrl_rep2
GSM4589094
RNA-seq_SRSF3_KD_rep1
GSM4589095
RNA-seq_SRSF3_KD_rep2
GSM4589096
RNA-seq_SRSF7_KD_rep1
GSM4589097
RNA-seq_SRSF7_KD_rep2
GSM4589098
RNA-seq_CPSF6_Ctrl_rep1
GSM4589099
RNA-seq_CPSF6_Ctrl_rep2
GSM4589100
RNA-seq_CPSF6_KD_rep1
GSM4589101
RNA-seq_CPSF6_KD_rep2
GSM4589102
RNA-seq_Undiff_rep1
GSM4589103
RNA-seq_Undiff_rep2
GSM4589104
RNA-seq_Undiff_rep3
GSM4589105
RNA-seq_Diff_rep1
GSM4589106
RNA-seq_Diff_rep2
GSM4589107
RNA-seq_Diff_rep3
GSM4589108
MACE-seq_SRSF3.7_Ctrl_rep1
GSM4589109
MACE-seq_SRSF3.7_Ctrl_rep2
GSM4589110
MACE-seq_SRSF3_KD_rep1
GSM4589111
MACE-seq_SRSF3_KD_rep2
GSM4589112
MACE-seq_SRSF7_KD_rep1
GSM4589113
MACE-seq_SRSF7_KD_rep2
This SuperSeries is composed of the following SubSeries:
GSE151720
Transcriptome-wide mapping of RNA:protein interactions of CPSF5 and FIP1 in P19 cells by iCLIP
GSE151721
RNA-seq of P19 cells after knockdown of Srsf3, Srsf7 and Cpsf6 and after differentiation into neuronal cells
GSE151722
MACE-seq of P19 cells after knockdown of Srsf3 and Srsf7
Relations
BioProject
PRJNA637050
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Format
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Supplementary data files not provided
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