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Series GSE150226 Query DataSets for GSE150226
Status Public on May 11, 2020
Title Heterogeneity and chimerism of endothelial cells revealed by single cell transcriptome in orthotopic liver tumors
Organisms Homo sapiens; Mus musculus
Experiment type Expression profiling by high throughput sequencing
Summary To understand endothelial cell heterogeneity in naïve liver as well as in adjacent normal and liver tumor tissue. The single cells were profiled by single cell RNAseq.
Overall design Tumors and normal tissue were dissociated, sorted into single cells, and profiled by 10x Genomics Chromium. Single cell 3' library, Gelbeads and multiplex kit were made by using 10x Genomics platform.
Contributor(s) Thurston G, Eichten A
Citation(s) 32440964
Submission date May 10, 2020
Last update date Aug 10, 2020
Contact name Alexandra Eichten
Organization name Regeneron Pharmaceuticals Inc.
Street address 777 old saw mill river road
City Tarrytown
State/province NY
ZIP/Postal code 10591
Country USA
Platforms (2)
GPL19057 Illumina NextSeq 500 (Mus musculus)
GPL19415 Illumina NextSeq 500 (Homo sapiens; Mus musculus)
Samples (30)
GSM4543668 1048239.HDD.Liver.C57Bl6.mm10
GSM4543669 1048240.HDD.Tumor.C57Bl6.mm10
GSM4543670 1048241.HDD.Liver.BALBc.mm10
BioProject PRJNA631541
SRA SRP260996

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE150226_RAW.tar 90.9 Mb (http)(custom) TAR (of TXT)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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