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Series GSE147660 Query DataSets for GSE147660
Status Public on May 04, 2020
Title PolyA-miner: Accurate assessment of differential Alternative Poly-Adenylation from 3’Seq data using Vector projections and Non-negative matrix factorization [mouse]
Organism Mus musculus
Experiment type Expression profiling by high throughput sequencing
Summary Plethora of misprimed and noisy APA sites are filtered out by PolyA-miner
 
Overall design Wild-type, male, C57BL/6J mouse, left hippocampal mRNA 3' end sequencing profiles generated by deep sequencing in triplicate.
 
Contributor(s) Yalamanchili HK, Alcott CE, Zoghbi HY, Liu Z
Citation(s) 32463457
Submission date Mar 27, 2020
Last update date Jul 20, 2020
Contact name Hari Krishna Yalamanchili
E-mail(s) hari.yalamanchili@bcm.edu
Organization name Baylor College of Medicine
Street address 1250 Moursund St #1125,
City Houston,
State/province TX
ZIP/Postal code 77030
Country USA
 
Platforms (1)
GPL16417 Illumina MiSeq (Mus musculus)
Samples (3)
GSM4437398 left hippocampus, wildtype 1
GSM4437399 left hippocampus, wildtype 2
GSM4437400 left hippocampus, wildtype 3
This SubSeries is part of SuperSeries:
GSE147661 PolyA-miner: Accurate assessment of differential Alternative Poly-Adenylation from 3’Seq data using Vector projections and Non-negative matrix factorization
Relations
BioProject PRJNA615892
SRA SRP254355

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE147660_RAW.tar 61.7 Mb (http)(custom) TAR (of BW)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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