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GEO accession:
Series GSE147568
Query DataSets for GSE147568
Status
Public on Aug 19, 2021
Title
A cis-acting mechanism mediates trancriptional memory at Polycomb target genes in mammals
Organism
Mus musculus
Experiment type
Expression profiling by high throughput sequencing
Genome binding/occupancy profiling by high throughput sequencing
Methylation profiling by high throughput sequencing
Summary
This SuperSeries is composed of the SubSeries listed below.
Overall design
Refer to individual Series
Citation(s)
34782763
Submission date
Mar 26, 2020
Last update date
Nov 18, 2021
Contact name
Daniel Holoch
E-mail(s)
daniel.holoch@curie.fr
Phone
0156246553
Organization name
Institut Curie, Centre de Recherche
Department
Genetics and Developmental Biology Unit
Lab
Raphaƫl Margueron
Street address
26 rue d'Ulm
City
Paris
State/province
Cedex 05
ZIP/Postal code
75248
Country
France
Platforms (3)
GPL16417
Illumina MiSeq (Mus musculus)
GPL17021
Illumina HiSeq 2500 (Mus musculus)
GPL24247
Illumina NovaSeq 6000 (Mus musculus)
Samples (101)
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More...
GSM4433499
NPC_mock_rep1
GSM4433500
NPC_mock_rep2
GSM4433501
NPC_inhibitors_rep1
GSM4433502
NPC_inhibitors_rep2
GSM4433503
NPC_washout_rep1
GSM4433504
NPC_washout_rep2
GSM4433505
Total_C2_Daniel
GSM4433506
Total_C2plusT_Daniel
GSM4433507
Total_C2plusTplusE2_Daniel
GSM4433508
Total_C26_Daniel
GSM4433509
Total_C26-Ezh2_Daniel
GSM4433510
Total_C26-Ezh2-Flp_Daniel
GSM4433511
Nascent_C2_Daniel
GSM4433512
Nascent_C2plusT_Daniel
GSM4433513
Nascent_C2plusTplusE2_Daniel
GSM4433514
Nascent_C26_Daniel
GSM4433515
Nascent_C26-Ezh2_Daniel
GSM4433516
Nascent_C26-Ezh2-Flp_Daniel
GSM4433517
Total_C2_Michel
GSM4433518
Total_C2plusT_Michel
GSM4433519
Total_C2plusTplusE2_Michel
GSM4433520
Total_C26_Michel
GSM4433521
Total_C26-Ezh2_Michel
GSM4433522
Total_C26-Ezh2-Flp_Michel
GSM4433523
Nascent_C2_Michel
GSM4433524
Nascent_C2plusT_Michel
GSM4433525
Nascent_C2plusTplusE2_Michel
GSM4433526
Nascent_C26_Michel
GSM4433527
Nascent_C26-Ezh2_Michel
GSM4433528
Nascent_C26-Ezh2-Flp_Michel
GSM4434060
NPC_H3K27me3_mock_rep1
GSM4434061
NPC_H3K27me3_mock_rep2
GSM4434062
NPC_H3K27me3_inhibitors_rep1
GSM4434063
NPC_H3K27me3_inhibitors_rep2
GSM4434064
NPC_H3K27me3_washout_rep1
GSM4434065
NPC_H3K27me3_washout_rep2
GSM4434066
K27me3_C2_Daniel
GSM4434067
K27me3_C2plusT_Daniel
GSM4434068
K27me3_C2plusTplusE2_Daniel
GSM4434071
K27me3_C26_Daniel
GSM4434072
K27me3_C26_Ezh2_Daniel
GSM4434073
K27me3_C2_Michel
GSM4434074
K27me3_C2plusT_Michel
GSM4434075
K27me3_C2plusTplusE2_Michel
GSM4434078
K27me3_C26_Michel
GSM4434079
K27me3_C26_Ezh2_Michel
GSM4434080
K27me3_C26-Ezh2-Flp_Daniel
GSM4434081
K27me3_C26-Ezh2-Flp_Michel
GSM4434082
C2_EZH2_input
GSM4434083
C2_EZH2-Pol2_rep1
GSM4434084
C2_EZH2-H3K4me3_rep1
GSM4434085
C2_EZH2-H3K36me3_rep1
GSM4434087
C2_EZH2-Pol2_rep2
GSM4434088
C2_EZH2-H3K4me3_rep2
GSM4434089
C2_EZH2-H3K36me3_rep2
GSM5208895
ES_E14_mock_rep1
GSM5208896
ES_E14_mock_rep2
GSM5208897
ES_E14_inhib_rep1
GSM5208898
ES_E14_inhib_rep2
GSM5208899
ES_E14_washout_rep1
GSM5208900
ES_E14_washout_rep2
GSM5208901
Nr2f1_WT_mock_rep1
GSM5208902
Nr2f1_WT_mock_rep2
GSM5208903
Nr2f1_WT_washout_rep1
GSM5208904
Nr2f1_WT_washout_rep2
GSM5208905
Foxa1_WT_mock_rep1
GSM5208906
Foxa1_WT_mock_rep2
GSM5208907
Foxa1_WT_washout_rep1
GSM5208908
Foxa1_WT_washout_rep2
GSM5208935
ATAC_C2_replicate_1
GSM5208936
ATAC_C2-T_replicate_1
GSM5208937
ATAC_C2-T-Ezh2_replicate_1
GSM5208938
ATAC_C2_replicate_2
GSM5208939
ATAC_C2-T_replicate_2
GSM5208940
ATAC_C2-T-Ezh2_replicate_2
GSM5208942
C2pos_BISULFIT_1ER
GSM5208943
C2posTAM_pos_BISULFIT_1ER
GSM5208944
C2pos_BISULFIT_2EME
GSM5208945
C2posTAM_pos_BISULFIT_2EME
GSM5404220
iMEFB_mock_rep1
GSM5404221
iMEFB_mock_rep2
GSM5404222
iMEFB_inhib_rep1
GSM5404223
iMEFB_inhib_rep2
GSM5404224
iMEFB_washout_rep1
GSM5404225
iMEFB_washout_rep2
GSM5404226
Nr2f1_WT_ON_mut_OFF
GSM5404227
Nr2f1_WT_ON_mut_ON
GSM5404228
Nr2f1_het3_mock
GSM5404229
Nr2f1_het3_induced
GSM5404230
Nr2f1_het3_washout
GSM5404231
Nr2f1_het9_mock
GSM5404232
Nr2f1_het9_induced
GSM5404233
Nr2f1_het9_washout
GSM5404234
Foxa1_WT_ON_mut_OFF
GSM5404235
Foxa1_WT_ON_mut_ON
GSM5404236
Foxa1_het7-5_mock
GSM5404237
Foxa1_het7-5_induced
GSM5404238
Foxa1_het7-5_washout
GSM5404239
Foxa1_het7-12_mock
GSM5404240
Foxa1_het7-12_induced
GSM5404241
Foxa1_het7-12_washout
This SuperSeries is composed of the following SubSeries:
Less...
More...
GSE147563
A cis-acting mechanism mediates trancriptional memory at Polycomb target genes in mammals [RNA-Seq]
GSE147567
A cis-acting mechanism mediates trancriptional memory at Polycomb target genes in mammals [ChIP-Seq]
GSE169534
A cis-acting mechanism mediates trancriptional memory at Polycomb target genes in mammals [ATAC-seq]
GSE169535
A cis-acting mechanism mediates trancriptional memory at Polycomb target genes in mammals [WGBS]
Relations
BioProject
PRJNA615391
Download family
Format
SOFT formatted family file(s)
SOFT
MINiML formatted family file(s)
MINiML
Series Matrix File(s)
TXT
Supplementary file
Size
Download
File type/resource
GSE147568_RAW.tar
3.9 Gb
(http)
(custom)
TAR (of BW, TXT)
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