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Series GSE147054 Query DataSets for GSE147054
Status Public on Apr 28, 2020
Title mSeq of vtRNA1.1 and vtRNA1.3 knockout or control cells in standard and starvation condition
Organism Homo sapiens
Experiment type Expression profiling by high throughput sequencing
Summary We report on how the loss of vtRNA1.1 reshapes the transcriptome in starved Hela cells. We observe misregulated transcript levels for proteins involved in cellular signaling cascades.
 
Overall design Examination of total mRNA isolated after starvation or control condition of Hela cells carrying a vtRNA 1.1 or vtRNA 1.3 knockout or wildtype
 
Contributor(s) Bracher L, Ferro I, Pulido-Quetglas C, Johnson R, Ruepp M, Polacek N
Citation(s) 32316166
Submission date Mar 16, 2020
Last update date Apr 28, 2020
Contact name Norbert Polacek
E-mail(s) ag.polacek@gmail.com, norbert.polacek@dcb.unibe.ch
Organization name University of Bern
Department Chemistry and Biochemistry
Street address Freiestrasse 3
City Bern
ZIP/Postal code 3012
Country Switzerland
 
Platforms (1)
GPL21290 Illumina HiSeq 3000 (Homo sapiens)
Samples (24)
GSM4413715 WT_total mRNA_control_condition_rep1
GSM4413716 WT_total mRNA_control_condition_rep2
GSM4413717 WT_total mRNA_control_condition_rep3
Relations
BioProject PRJNA612851
SRA SRP252980

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Supplementary file Size Download File type/resource
GSE147054_RAW.tar 103.4 Mb (http)(custom) TAR (of XLSX)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file
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