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GEO accession:
Series GSE146942
Query DataSets for GSE146942
Status
Public on Jun 25, 2020
Title
Single-molecule regulatory architectures captured by chromatin fiber sequencing
Organisms
Drosophila melanogaster
;
Homo sapiens
Experiment type
Other
Summary
This SuperSeries is composed of the SubSeries listed below.
Overall design
Refer to individual Series
Citation(s)
32587015
Submission date
Mar 13, 2020
Last update date
Sep 24, 2020
Contact name
John A Stamatoyannopoulos
E-mail(s)
jstam@altius.org
Organization name
Altius Institute / University of Washington
Department
Genome Sciences
Lab
Stamatoyannopoulos
Street address
2211 Elliott Avenue, 6th Floor
City
SEATTLE
State/province
WA
ZIP/Postal code
98121
Country
USA
Platforms (6)
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GPL20301
Illumina HiSeq 4000 (Homo sapiens)
GPL21306
Illumina HiSeq 4000 (Drosophila melanogaster)
GPL26180
Sequel (Homo sapiens)
GPL28352
Sequel II (Homo sapiens)
GPL28353
Sequel II (Drosophila melanogaster)
GPL28354
Sequel (Drosophila melanogaster)
Samples (32)
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GSM4411194
S2-DSRC m6A-IP-seq
GSM4411195
S2-DSRC AdMTase-seq (200 U Hia5) - rep1
GSM4411196
S2-DSRC AdMTase-seq (60 U Hia5) - rep1
GSM4411197
S2-DSRC AdMTase-seq (20 U Hia5) - rep1
GSM4411198
S2-DSRC AdMTase-seq (6 U Hia5) - rep1
GSM4411199
S2-DSRC AdMTase-seq (2 U Hia5) - rep1
GSM4411200
S2-DSRC DNA Input Control
GSM4411201
S2-DSRC AdMTase-seq (6 U Hia5) - rep2
GSM4411202
S2-DSRC AdMTase-seq (2 U Hia5) - rep2
GSM4411203
S2-DSRC AdMTase-seq (0.6 U Hia5)
GSM4411204
S2-DSRC AdMTase-seq (6 U Btr192IV)
GSM4411205
S2-DSRC AdMTase-seq (2 U Btr192IV)
GSM4411206
S2-DSRC AdMTase-seq (0.6 U Btr192IV)
GSM4411207
S2-DSRC AdMTase-seq (2 U EcoGI)
GSM4411208
S2-DSRC AdMTase-seq (0.6 U EcoGI)
GSM4411209
S2-DSRC AdMTase-seq (6 U EcoGII)
GSM4411210
S2-DSRC AdMTase-seq (2 U EcoGII)
GSM4411211
S2-DSRC AdMTase-seq (0.6 U EcoGII)
GSM4411212
S2-DSRC AdMTase-seq (2 U Hin1523)
GSM4411213
Hela AdMTase-seq (0.5 U Hia5)
GSM4411214
Hela AdMTase-seq (1.0 U Hia5)
GSM4411215
K562 AdMTase-seq (0.5 U Hia5)
GSM4411216
K562 AdMTase-seq (1.0 U Hia5)
GSM4411217
S2-DSRC DNaseI-seq
GSM4411218
S2-DSRC Fiber-seq (500 U Hia5)
GSM4411219
S2-DSRC Fiber-seq (20 U Hia5)
GSM4411220
S2-DSRC deproteinized Hia5 control
GSM4411221
S2-DSRC genomic DNA control
GSM4411222
K562 Fiber-seq (500 U Hia5) rep1 run1
GSM4411223
K562 Fiber-seq (500 U Hia5) rep1 run2
GSM4411224
K562 Fiber-seq (500 U Hia5) rep2
GSM4411225
K562 Fiber-seq (20 U Hia5) rep3
This SuperSeries is composed of the following SubSeries:
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GSE146937
Single-molecule regulatory architectures captured by chromatin fiber sequencing [Dm AdMTase-seq]
GSE146938
Single-molecule regulatory architectures captured by chromatin fiber sequencing [Hs AdMTase-seq]
GSE146939
Single-molecule regulatory architectures captured by chromatin fiber sequencing [DNAseI-seq]
GSE146940
Single-molecule regulatory architectures captured by chromatin fiber sequencing [Dm Fiber-seq]
GSE146941
Single-molecule regulatory architectures captured by chromatin fiber sequencing [Hs Fiber-seq]
Relations
BioProject
PRJNA612471
Download family
Format
SOFT formatted family file(s)
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MINiML formatted family file(s)
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Series Matrix File(s)
TXT
Supplementary file
Size
Download
File type/resource
GSE146942_RAW.tar
1.8 Gb
(http)
(custom)
TAR (of BED)
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