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Series GSE146152 Query DataSets for GSE146152
Status Public on Aug 13, 2020
Title Erythrophagocytosis drives anti-inflammatory programming of liver macrophages [Agilent]
Organism Mus musculus
Experiment type Expression profiling by array
Summary Under conditions of erythrolytic stress, which accompanies many disease states, macrophages play key roles in phagocytosing damaged RBCs and preventing the toxic effects of cell-free hemoglobin and heme to maintain homeostasis. Using a genetic mouse model of spherocytosis and single-cell RNA sequencing, we show that erythrolytic stress promotes expansion of a specific macrophage population in the liver (which we named “erythrophagocytes”) expressing high levels of Marco and Hmox1 and low levels of MHC class II related genes with an anti-inflammatory gene expression signature. We confirmed the strong anti-inflammatory function of erythrophagocytes in two models of sterile inflammatory liver disease: anti-CD40 antibody-induced systemic inflammation syndrome with necrotizing hepatitis and diet-induced nonalcoholic fatty liver disease (NAFLD). The unique anti-inflammatory phenotype and function of erythrophagocytes was reproduced in vitro by heme-exposure of mouse macrophages, yielding a transcriptional profile that segregated heme-polarized from classical M1- and M2-polarized cells. The phenotype of anti-inflammatory erythrophagocytes coincided with NFE2L2/NRF2 driven gene expression and was abolished in Nfe2l2/Nrf2-deficient macrophages. Our findings point to a novel pathway that regulates macrophage functions to link RBC homeostasis and heme metabolism with innate immunity.
 
Overall design A two color common reference design was chosen with 3-5 independent biological replicates of each condition. Each experimental sample (Cy5 labeled) was hybridized against a non-treated reference sample (Cy3 labeled).
 
Contributor(s) Schaer CA, Pfefferlé M, Ingoglia G, Schaer DJ, Vallelian F
Citation(s) 32663195
Submission date Mar 01, 2020
Last update date Nov 27, 2020
Contact name Marc Pfefferle
E-mail(s) marc.pfefferle@uzh.ch
Organization name University hospital Zürich (USZ)
Street address Wagistrasse 12
City Schlieren
State/province Schweiz
ZIP/Postal code 8952
Country Switzerland
 
Platforms (1)
GPL10333 Agilent-026655 Whole Mouse Genome Microarray 4x44K v2 (Feature Number version)
Samples (18)
GSM4367274 BMDM_Control_a
GSM4367275 BMDM_Control_b
GSM4367276 BMDM_Control_c
This SubSeries is part of SuperSeries:
GSE145244 Erythrophagocytosis drives anti-inflammatory programming of liver macrophages
Relations
BioProject PRJNA609562

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE146152_RAW.tar 82.0 Mb (http)(custom) TAR (of TXT)
Processed data included within Sample table
Processed data provided as supplementary file

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