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Series GSE145978 Query DataSets for GSE145978
Status Public on Mar 22, 2021
Title Hi-C of fibroblasts and germ cells from wild mice with Rb fusions
Organism Mus musculus domesticus
Experiment type Other
Summary Structural data of genome organization in somatic cells (fibroblasts) and germ cells (primary spermatocytes and round spermatids) from wild mice with Rb fusions from the Barcelona Rb System.
 
Overall design Spermatogenesis cell populations were isolated by Fluorescence-Activated Cell sorting. Hi-C of isolated populations (primary spermatocytes at lpachynema/diplonema stage and round spermatids) and fibroblasts (by the establishment of a cell line from Rb mice tissue).
 
Contributor(s) Vara C, Paytuví-Gallart A, Ruiz-Herrera A
Citation(s) 34016985
Submission date Feb 26, 2020
Last update date Jun 09, 2021
Contact name Covadonga Vara
E-mail(s) covavara92@gmail.com
Organization name Universitat Autònoma de Barcelona
Department Biologia cel·lular, Fisiologia i Immunologia
Lab Citologia
Street address Campus UAB
City Cerdanyola del Vallès (Bellaterra)
State/province Barcelona
ZIP/Postal code 08193
Country Spain
 
Platforms (1)
GPL17637 Illumina HiSeq 2000 (Mus musculus domesticus)
Samples (3)
GSM4340614 Fibroblast Rb Hi-C
GSM4340615 PD Rb Hi-C
GSM4340616 RS Rb Hi-C
Relations
BioProject PRJNA608908
SRA SRP250830

Download family Format
SOFT formatted family file(s) SOFTHelp
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Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE145978_RAW.tar 707.2 Mb (http)(custom) TAR (of H5)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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