|
| Status |
Public on Sep 03, 2020 |
| Title |
Landscape of open chromatin regions in Arabidopsis upon exposure to abiotic stresses |
| Organism |
Arabidopsis thaliana |
| Experiment type |
Genome binding/occupancy profiling by high throughput sequencing
Other
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| Summary |
The goal of the study is to illustrate how various abiotic stresses reshape the chromatin architecture of the Arabidopsis genome to fine tune gene expression.
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| Overall design |
10 day old Arabidopsis seedlings were subjected to heat (38C for 6h), cold (4C for 24h), salt (250mM Nacl for 6h) and drought(1h) and open chromatin was extracted using FAIRE-seq and Dnase-seq. RNA-seq was also performed from same tissue.
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| Contributor(s) |
Raxwal VK, Agarwal M |
| Citation(s) |
32526034 |
| |
| Submission date |
Feb 21, 2020 |
| Last update date |
Sep 03, 2020 |
| Contact name |
Vivek Kumar Raxwal |
| E-mail(s) |
vivek.raxwal@ceitec.muni.cz
|
| Organization name |
Central European Institute of Technology
|
| Department |
Plant Molecular Biology
|
| Street address |
building A26, Kamenice 753/5
|
| City |
Brno |
| ZIP/Postal code |
62500 |
| Country |
Czech Republic |
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| Platforms (1) |
| GPL13222 |
Illumina HiSeq 2000 (Arabidopsis thaliana) |
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| Samples (33)
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| Relations |
| BioProject |
PRJNA608029 |
| SRA |
SRP250345 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSE145742_Cold_D_macs2_peaks.narrowPeak.gz |
1.4 Mb |
(ftp)(http) |
NARROWPEAK |
| GSE145742_Cold_F_macs2_peaks.narrowPeak.gz |
1.3 Mb |
(ftp)(http) |
NARROWPEAK |
| GSE145742_Control_D_macs2_peaks.narrowPeak.gz |
1.6 Mb |
(ftp)(http) |
NARROWPEAK |
| GSE145742_Control_F_macs2_peaks.narrowPeak.gz |
1.6 Mb |
(ftp)(http) |
NARROWPEAK |
| GSE145742_Drought_D_macs2_peaks.narrowPeak.gz |
1.0 Mb |
(ftp)(http) |
NARROWPEAK |
| GSE145742_Drought_F_macs2_peaks.narrowPeak.gz |
2.1 Mb |
(ftp)(http) |
NARROWPEAK |
| GSE145742_Heat_D_macs2_peaks.narrowPeak.gz |
1.3 Mb |
(ftp)(http) |
NARROWPEAK |
| GSE145742_Heat_F_macs2_peaks.narrowPeak.gz |
1.9 Mb |
(ftp)(http) |
NARROWPEAK |
| GSE145742_Salt_D_macs2_peaks.narrowPeak.gz |
1.2 Mb |
(ftp)(http) |
NARROWPEAK |
| GSE145742_Salt_F_macs2_peaks.narrowPeak.gz |
2.0 Mb |
(ftp)(http) |
NARROWPEAK |
SRA Run Selector |
| Raw data are available in SRA |
| Processed data are available on Series record |
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