|
| Status |
Public on Apr 26, 2021 |
| Title |
DNA G-quadruplexes modulate highly transcribed genes in human chromatin |
| Organism |
Homo sapiens |
| Experiment type |
Genome binding/occupancy profiling by high throughput sequencing
Expression profiling by high throughput sequencing
|
| Summary |
This SuperSeries is composed of the SubSeries listed below.
|
| |
|
| Overall design |
Refer to individual Series
|
| |
|
| Citation(s) |
34162892 |
|
Sara Lago, Filippo M. Cernilogar, Maryam Kazerani, Helena DomÃniguez Moreno, Matteo Nadai, Gunnar Schotta, and Sara N. Richter. Promoter G-quadruplexes and transcription factors cooperate to shape the cell type-specific transcriptome. bioRxiv 2020.08.27.236778; doi:10.1101/2020.08.27.236778
|
| |
| Submission date |
Feb 19, 2020 |
| Last update date |
Jul 14, 2021 |
| Contact name |
Filippo M. Cernilogar |
| E-mail(s) |
filippo.cernilogar@med.uni-muenchen.de
|
| Organization name |
LMU Munich
|
| Department |
Biomedical Center
|
| Street address |
Grosshaderner Strasse 9
|
| City |
Planegg-Martinsried |
| ZIP/Postal code |
82152 |
| Country |
Germany |
| |
|
| Platforms (1) |
| GPL18460 |
Illumina HiSeq 1500 (Homo sapiens) |
|
| Samples (11)
|
| GSM4320548 |
IP-93T449-BG4_rep2 |
| GSM4320549 |
INPUT-93T449-BG4_rep2 |
| GSM4320558 |
RNAseq of 93T449 liposarcoma cell line rep1 |
| GSM4320559 |
RNAseq of 93T449 liposarcoma cell line rep2 |
| GSM4320560 |
RNAseq of 93T449 liposarcoma cell line rep3 |
| GSM4320561 |
RNAseq of c-exNDI treated 93T449 liposarcoma cell line rep1 |
| GSM4320562 |
RNAseq of c-exNDI treated 93T449 liposarcoma cell line rep2 |
| GSM4320563 |
RNAseq of c-exNDI treated 93T449 liposarcoma cell line rep3 |
|
| This SuperSeries is composed of the following SubSeries: |
| GSE145532 |
DNA G-quadruplexes modulate highly transcribed genes in human chromatin [ATAC-seq] |
| GSE145535 |
DNA G-quadruplexes modulate highly transcribed genes in human chromatin [ChIPseq] |
| GSE145537 |
DNA G-quadruplexes modulate highly transcribed genes in human chromatin [RNA-seq] |
|
| Relations |
| BioProject |
PRJNA607527 |
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