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Series GSE145257 Query DataSets for GSE145257
Status Public on Jul 20, 2020
Title Identification of active gene regulatory elements in the human and murine TBX3 locus
Organisms Homo sapiens; Mus musculus
Experiment type Other
Summary The human and murine TBX3 locus harbors hundreds of active regulatory elements responding to Smad-/Gata- and Tcf-transcription factors in vitro.
Overall design STARR-seq with the entire human and murine TBX3 locus as input, transfected in replicate experiments in COS7 cells and co-transfected with pcDNA (ctrl), Smad- and Gata factors (SG4) or Tcf factors (Wnt).
Contributor(s) van Weerd JH, van Duijvenboden K, Christoffels VM
Citation(s) 32672536
Submission date Feb 13, 2020
Last update date Jul 20, 2020
Contact name Vincent M. Christoffels
Phone 0205667821
Organization name Amsterdam UMC
Department Medical Biology
Lab Vincent Christoffels
Street address Meibergdreef 15 K2-159
City Amsterdam
State/province N/A (NA)
ZIP/Postal code 1105 AZ
Country Netherlands
Platforms (2)
GPL15520 Illumina MiSeq (Homo sapiens)
GPL16417 Illumina MiSeq (Mus musculus)
Samples (19)
GSM4310259 hSTARR_input_1
GSM4310260 hSTARR_input_2
GSM4310261 hSTARR_input_3
BioProject PRJNA606524
SRA SRP249324

Download family Format
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Supplementary file Size Download File type/resource
GSE145257_RAW.tar 15.4 Mb (http)(custom) TAR (of BED, BIGWIG)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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