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GEO accession:
Series GSE144859
Query DataSets for GSE144859
Status
Public on Jan 08, 2021
Title
IFN-gamma+ NK cells control TRAIL+ anti-inflammatory astrocytes
Organism
Mus musculus
Experiment type
Expression profiling by high throughput sequencing
Summary
This SuperSeries is composed of the SubSeries listed below.
Overall design
Refer to individual Series
Citation(s)
33408417
Submission date
Feb 06, 2020
Last update date
Apr 09, 2021
Contact name
Michael Wheeler
E-mail(s)
mwheeler0@bwh.harvard.edu
Organization name
Brigham and Women's Hospital
Department
Neurology
Street address
60 Fenwood Rd.
City
Boston
State/province
MA
ZIP/Postal code
02115
Country
USA
Platforms (2)
GPL19057
Illumina NextSeq 500 (Mus musculus)
GPL24247
Illumina NovaSeq 6000 (Mus musculus)
Samples (53)
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GSM4291061
EAE_Tomato+LAMP+TRAIL-
GSM4291062
EAE_Tomato+LAMP+TRAIL+
GSM4291063
Naive_Tomato+LAMP+TRAIL+
GSM4291064
Naive_Tomato+LAMP+TRAIL-
GSM4299597
Scr [AGGCAGAA_ATAGAGAG]
GSM4299598
Scr [CGTACTAG_ATAGAGAG]
GSM4299599
LampKD [GGACTCCT_ATAGAGAG]
GSM4299600
Scr [TAAGGCGA_ATAGAGAG]
GSM4299601
LampKD [TAGGCATG_ATAGAGAG]
GSM4299602
LampKD [TCCTGAGC_ATAGAGAG]
GSM4299802
SgScrmbl TAGCGCTC_TCTTACGC
GSM4299803
SgScrmbl ACTGAGCG_TCTTACGC
GSM4299804
SgScrmbl CCTAAGAC_TCTTACGC
GSM4299805
SgScrmbl CGATCAGT_TCTTACGC
GSM4299806
SgTnfsf10 TGCAGCTA_TCTTACGC
GSM4299807
SgTnfsf10 TCGACGTC_TCTTACGC
GSM4299808
SgTnfsf10 ACTCGCTA_CTTAATAG
GSM4299809
SgIfngr1 GGAGCTAC_CTTAATAG
GSM4299810
SgIfngr1 GCGTAGTA_CTTAATAG
GSM4299811
SgIfngr1 CGGAGCCT_CTTAATAG
GSM4299812
SgIfngr1 TACGCTGC_CTTAATAG
GSM4299813
SgIfngr2 ATGCGCAG_CTTAATAG
GSM4299814
SgIfngr2 TAGCGCTC_CTTAATAG
GSM4299815
SgIfngr2 ACTGAGCG_CTTAATAG
GSM4299816
SgIfngr2 CCTAAGAC_CTTAATAG
GSM4299817
SgStat1 CGATCAGT_CTTAATAG
GSM4299818
SgStat1 TGCAGCTA_CTTAATAG
GSM4299819
SgStat1 TCGACGTC_CTTAATAG
GSM4299820
SgStat1 ACTCGCTA_ATAGCCTT
GSM4670259
sgScrmbl [GGAGCTAC_ATAGCCTT]
GSM4670260
sgScrmbl [GCGTAGTA_ATAGCCTT]
GSM4670261
sgScrmbl [CGGAGCCT_ATAGCCTT]
GSM4670262
sgScrmbl [TACGCTGC_ATAGCCTT]
GSM4670263
sgTnfsf10 [ATGCGCAG_ATAGCCTT]
GSM4670264
sgTnfsf10 [TAGCGCTC_ATAGCCTT]
GSM4670265
sgTnfsf10 [ACTGAGCG_ATAGCCTT]
GSM4670266
sgIfngr1 [CCTAAGAC_ATAGCCTT]
GSM4670267
sgIfngr1 [CGATCAGT_ATAGCCTT]
GSM4670268
sgIfngr1 [TGCAGCTA_ATAGCCTT]
GSM4670269
sgIfngr1 [TCGACGTC_ATAGCCTT]
GSM4670270
sgIfngr2 [ACTCGCTA_TAAGGCTC]
GSM4670271
sgIfngr2 [GGAGCTAC_TAAGGCTC]
GSM4670272
sgIfngr2 [GCGTAGTA_TAAGGCTC]
GSM4670273
sgIfngr2 [CGGAGCCT_TAAGGCTC]
GSM4670274
sgStat1 [TACGCTGC_TAAGGCTC]
GSM4670275
sgStat1 [ATGCGCAG_TAAGGCTC]
GSM4670276
sgStat1 [TAGCGCTC_TAAGGCTC]
GSM4670277
sgStat1 [ACTGAGCG_TAAGGCTC]
GSM4774926
GGACTCCT
GSM4774927
TAGGCATG
GSM4774928
TAGCGCTC
GSM4774929
TAAGGCGA
GSM4774930
CGTACTAG
This SuperSeries is composed of the following SubSeries:
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GSE144572
Genome-wide analysis of the transcriptional profile of TRAIL+LAMP1+ astrocytes and LAMP1+ astrocytes during EAE in Aldh1l1CreERT2-TdTomato mice by scRNA-seq
GSE144855
Genome-wide analysis of the transcriptional profile of WT and Lamp1 KD astrocytes during EAE in B6 mice
GSE144872
Analysis of astrocyte interferon gamma signaling during EAE.
GSE154389
Analysis of microglia responses following astrocyte knockdown of interferon gamma signaling during EAE.
GSE157782
Genome-wide analysis of the transcriptional profile of astrocytes during EAE in Gfap-TdTomato mice by scRNA-seq.
Relations
BioProject
PRJNA605158
Download family
Format
SOFT formatted family file(s)
SOFT
MINiML formatted family file(s)
MINiML
Series Matrix File(s)
TXT
Supplementary file
Size
Download
File type/resource
GSE144859_RAW.tar
386.9 Mb
(http)
(custom)
TAR (of H5, JSON, TSV, TXT)
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