GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
Series GSE143694 Query DataSets for GSE143694
Status Public on Jan 01, 2023
Title Monitoring the differential expression of miRNAs, tRNAs and tRFs in lung cancer biopsies.
Organism Homo sapiens
Experiment type Non-coding RNA profiling by high throughput sequencing
Expression profiling by high throughput sequencing
Summary Translational rate has been deregulated in many cancers through small non-coding RNAs aberrations. Herein we focus on miRNAs, tRNAs and tRFs paterns in lung cancer biopsies.
Overall design We performed semiconductor sequencing with modification of the standard protocol to enrich the tRNAs and tRFs and analyze the data measuring their abundance.
Contributor(s) Skeparnias I, Anastasakis D, Grafanaki K, Alexopoulos P, Dougenis D, Scorilas A, Kontos C, Stathopoulos C
Citation(s) 33092114
Submission date Jan 15, 2020
Last update date Apr 03, 2023
Contact name Constantinos Stathopoulos
Organization name University of Patras
Department Department of Biochemistry
Street address Asklipiou 1
City Patras
ZIP/Postal code 26504
Country Greece
Platforms (2)
GPL17301 Ion Torrent PGM (Homo sapiens)
GPL21290 Illumina HiSeq 3000 (Homo sapiens)
Samples (19)
GSM4272723 Normal1_Small
GSM4272724 Normal2_Small
GSM4272725 Normal3_Small
BioProject PRJNA601315
SRA SRP242011

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE143694_miRNAs.xlsx 361.0 Kb (ftp)(http) XLSX
GSE143694_tRF_3021.xlsx 855.4 Kb (ftp)(http) XLSX
GSE143694_tRF_5003.xlsx 861.8 Kb (ftp)(http) XLSX
GSE143694_tRFs.xlsx 43.8 Kb (ftp)(http) XLSX
GSE143694_tRNAs.xlsx 67.2 Kb (ftp)(http) XLSX
SRA Run SelectorHelp
Raw data are available in SRA
Processed data are available on Series record

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap