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Series GSE143676 Query DataSets for GSE143676
Status Public on Jun 29, 2022
Title Consticted migration is associated with stable 3D genome structure differences in cancer cells (Hi-C)
Organism Homo sapiens
Experiment type Other
Summary We investigated the effect of constricted migration (using transwell assays with 5-μm or 12-μm in diameter) on the organization of the 3D genome in melanoma and breast cancer cells.
Overall design Hi-C was performed to investigate changes in 3D genome organization after constricted migration. This experiment was performed on all sub-populations of A375 with two biological replicates per condition.
Contributor(s) Golloshi R, Playter C, Freeman TF, Das P, Raines TI, Garretson JH, Thurston D, McCord RP
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Submission date Jan 14, 2020
Last update date Nov 29, 2022
Contact name Rosela Golloshi
Organization name University of Tennessee Knoxville
Department Department of Biochemistry & Cellular and Molecular Biology
Lab Rachel Patton McCord Lab
Street address 1311 Cumberland Avenue
City Knoxville
State/province TN
ZIP/Postal code 37996
Country USA
Platforms (2)
GPL21290 Illumina HiSeq 3000 (Homo sapiens)
GPL24676 Illumina NovaSeq 6000 (Homo sapiens)
Samples (27)
GSM4272413 A375_Control_R1_HiC
GSM4272414 A375_Control_R2_HiC
GSM4272415 A375_Top5_R1_HiC
This SubSeries is part of SuperSeries:
GSE143678 Consticted migration is associated with stable 3D genome structure differences in cancer cells
BioProject PRJNA601219
SRA SRP241953

Download family Format
SOFT formatted family file(s) SOFTHelp
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Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE143676_RAW.tar 9.9 Gb (http)(custom) TAR (of TAR)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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