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Series GSE143674 Query DataSets for GSE143674
Status Public on Jun 29, 2022
Title Consticted migration is associated with stable 3D genome structure differences in cancer cells (ATAC-Seq)
Organism Homo sapiens
Experiment type Genome binding/occupancy profiling by high throughput sequencing
Summary We investigated the effect of constricted migration (using transwell assays with 5-μm or 12-μm in diameter) on the organization of the 3D genome in melanoma cells.
Overall design ATAC-Seq was performed to investigate chromatin accessibility state. This experiment was performed on Control, Top-5 and Bottom-5 cells and only one biological replicates was performed for each condition.
Contributor(s) Golloshi R, Playter C, Freeman TF, Das P, Raines TI, Garretson JH, Thurston D, McCord RP
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Submission date Jan 14, 2020
Last update date Jun 30, 2022
Contact name Rosela Golloshi
Organization name University of Tennessee Knoxville
Department Department of Biochemistry & Cellular and Molecular Biology
Lab Rachel Patton McCord Lab
Street address 1311 Cumberland Avenue
City Knoxville
State/province TN
ZIP/Postal code 37996
Country USA
Platforms (1)
GPL21290 Illumina HiSeq 3000 (Homo sapiens)
Samples (2)
GSM4272375 A375-Top5
GSM4272376 A375-Bottom5
This SubSeries is part of SuperSeries:
GSE143678 Consticted migration is associated with stable 3D genome structure differences in cancer cells
BioProject PRJNA601213
SRA SRP241949

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Supplementary file Size Download File type/resource
GSE143674_RAW.tar 174.1 Mb (http)(custom) TAR (of BW)
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Raw data are available in SRA
Processed data provided as supplementary file

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