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Series GSE142445 Query DataSets for GSE142445
Status Public on Dec 31, 2022
Title Dynamic brain cell changes after middle cerebral artery occlusion revealed by massive single cell RNAseq
Organism Mus musculus
Experiment type Expression profiling by high throughput sequencing
Summary We used 10XGenomics Single Cell 3' Droplet-based single cell approach to profile adult mouse cortical brain cells after middle cerebral artery occlusion.
 
Overall design Single brain cells were isolated and profiled from two brain regions (both ipsilateral perilesional regions and its coresponding contralateral regions ) and 4 different time points after MCAO (4hrs, 1 day, 3 days and 7 days). Moreover, single cells from 3 uninjured mice coresponding regions were also being profiled.
 
Contributor(s) Sun YE, Ge W
Citation missing Has this study been published? Please login to update or notify GEO.
Submission date Dec 20, 2019
Last update date Jan 02, 2023
Contact name Weihong Ge
E-mail(s) wge@mednet.ucla.edu
Organization name UCLA
Street address 635 Charles E Young Dr South 355
City Los Angeles
State/province CA
ZIP/Postal code 90095
Country USA
 
Platforms (1)
GPL24247 Illumina NovaSeq 6000 (Mus musculus)
Samples (11)
GSM4227433 4hr_contralateral
GSM4227434 4hr_ipsilateral
GSM4227435 1d_contralateral
Relations
BioProject PRJNA597034
SRA SRP238403

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE142445_RAW.tar 131.5 Mb (http)(custom) TAR (of TAR)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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