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Series GSE142431 Query DataSets for GSE142431
Status Public on Dec 21, 2019
Title Paracrine orchestration of intestinal tumorigenesis by a confined mesenchymal niche
Organism Mus musculus
Experiment type Expression profiling by high throughput sequencing
Summary This SuperSeries is composed of the SubSeries listed below.
Overall design Refer to individual Series
Citation(s) 32322056
Submission date Dec 20, 2019
Last update date Apr 29, 2020
Contact name Richard Flavell
Organization name Yale University
Department Department of Immunobiology
Street address 300 Cedar Street, TAC S-569
City New Haven
State/province CT
ZIP/Postal code 06511
Country USA
Platforms (2)
GPL19057 Illumina NextSeq 500 (Mus musculus)
GPL21273 HiSeq X Ten (Mus musculus)
Samples (13)
GSM4227181 Ptger4 epithelial knock-out-1 (V1A)
GSM4227182 Ptger4 epithelial knock-out-2 (V1B)
GSM4227183 Ptger4 flox-1 (F1A)
This SuperSeries is composed of the following SubSeries:
GSE142418 Single cell RNA sequencing of cells isolated from the intestinal crypts of mice bearing epithelial cell-specific Ptger4 ablation (Drop-seq)
GSE142420 Single cell RNA sequencing of intestinal fibroblast-crypt co-cultures in organoid growth media with/without Ptger4/EP4 inhibitor (Drop-seq)
GSE142423 Single cell RNA sequencing analysis of the mouse colonic mesenchyme (Drop-seq)
BioProject PRJNA597014

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE142431_RAW.tar 25.3 Mb (http)(custom) TAR (of TXT)
SRA Run SelectorHelp

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