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Series GSE142248 Query DataSets for GSE142248
Status Public on Feb 27, 2020
Title Chronic circadian misalignment accelerates immune senescence and abbreviates lifespan in mice
Organism Mus musculus
Experiment type Expression profiling by high throughput sequencing
Summary Modern society characterized by a 24/7 lifestyle leads to misalignment between environmental cycles and endogenous circadian rhythms. Persisting circadian misalignment leads to deleterious effects on health and healthspan. However, the underlying mechanism remains not fully understood. Here, we subjected adult, wild-type mice to distinct chronic jet-lag paradigms, which showed that long-term circadian misalignment induced significant early mortality. Non-biased RNA sequencing analysis using liver and kidney showed marked activation of gene regulatory pathways associated with the immune system and immune disease in both organs. In accordance, we observed enhanced steatohepatitis with infiltration of inflammatory cells. The investigation of senescence-associated immune cell subsets from the spleens and mesenteric lymph nodes revealed an increase in PD-1+CD44high CD4 T cells as well as CD95+GL7+ germinal center B cells, indicating that the long-term circadian misalignment exacerbates immune senescence and consequent chronic inflammation. Our results underscore immune homeostasis as a pivotal interventional target against clock-related disorders.
 
Overall design Examination of whole transcriptome in mouse liver and kidney exposing to ADV and LD conditions
 
Contributor(s) Inokawa H, Umemura Y, Koike N, Yagita K
Citation(s) 32054990
Submission date Dec 18, 2019
Last update date Feb 27, 2020
Contact name Kazuhiro Yagita
E-mail(s) kyagita@koto.kpu-m.ac.jp
Organization name Kyoto Prefectural University of Medicine
Street address Kawaramachi-Hirokoji, Kamigyo-ku
City Kyoto
ZIP/Postal code 602-8566
Country Japan
 
Platforms (2)
GPL17021 Illumina HiSeq 2500 (Mus musculus)
GPL24247 Illumina NovaSeq 6000 (Mus musculus)
Samples (16)
GSM4223688 L63_Liver_mRNA-seq
GSM4223689 L65_Liver_mRNA-seq
GSM4223690 L86_Liver_mRNA-seq
Relations
BioProject PRJNA596388
SRA SRP238068

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE142248_CJL_2yKidney_knownCanonical2018_mm10_exon_FPKM.txt.gz 2.1 Mb (ftp)(http) TXT
GSE142248_CJL_2yLiver_knownCanonical2018_mm10_exon_FPKM.txt.gz 2.0 Mb (ftp)(http) TXT
GSE142248_RAW.tar 1.3 Gb (http)(custom) TAR (of BW)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file
Processed data are available on Series record

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