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GEO help: Mouse over screen elements for information. |
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| Status |
Public on Jun 27, 2023 |
| Title |
Single-cell ATAC-seq of mouse thymus iNKT cells |
| Organism |
Mus musculus |
| Experiment type |
Genome binding/occupancy profiling by high throughput sequencing
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| Summary |
Invariant natural killer T (iNKT) cells are innate-like T cells. Although remarkable advancements in the understanding of iNKT cell development have been made, the underlying molecular programs that guide iNKT cell lineages and the heterogeneity of iNKT subsets remain unclear.
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| Overall design |
We profiled the chromatin accessibility patterns of individual mouse thymic iNKT cells across their developmental stages (stages 0 to 3) using a droplet-based single-cell ATAC-sequencing (scATAC-seq) approach.
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| Contributor(s) |
Wang J, Adrianto I, Wu X, Zhou L, Mi Q |
| Citation(s) |
37336875 |
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| Submission date |
Dec 11, 2019 |
| Last update date |
Jun 29, 2023 |
| Contact name |
Indra Adrianto |
| E-mail(s) |
iadrian1@hfhs.org
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| Phone |
313-874-5999
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| Organization name |
Henry Ford Health System
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| Department |
Public Health Sciences
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| Street address |
1 Ford Place
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| City |
Detroit |
| State/province |
MI |
| ZIP/Postal code |
48202 |
| Country |
USA |
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| Platforms (1) |
| GPL24247 |
Illumina NovaSeq 6000 (Mus musculus) |
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| Samples (5)
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| GSM4213749 |
Mouse thymus stage 0 Va14 iNKT scATAC-seq |
| GSM4213750 |
Mouse thymus stage 0 B6 iNKT scATAC-seq |
| GSM4213751 |
Mouse thymus stage 1 B6 iNKT scATAC-seq |
| GSM4213752 |
Mouse thymus stage 2 B6 iNKT scATAC-seq |
| GSM4213753 |
Mouse thymus stage 3 B6 iNKT scATAC-seq |
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| Relations |
| BioProject |
PRJNA594923 |
| SRA |
SRP236603 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSE141825_RAW.tar |
7.6 Gb |
(http)(custom) |
TAR (of BED, CSV, H5, MTX, TBI, TSV) |
SRA Run Selector |
| Raw data are available in SRA |
| Processed data provided as supplementary file |
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