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Series GSE141825 Query DataSets for GSE141825
Status Public on Jun 27, 2023
Title Single-cell ATAC-seq of mouse thymus iNKT cells
Organism Mus musculus
Experiment type Genome binding/occupancy profiling by high throughput sequencing
Summary Invariant natural killer T (iNKT) cells are innate-like T cells. Although remarkable advancements in the understanding of iNKT cell development have been made, the underlying molecular programs that guide iNKT cell lineages and the heterogeneity of iNKT subsets remain unclear.
Overall design We profiled the chromatin accessibility patterns of individual mouse thymic iNKT cells across their developmental stages (stages 0 to 3) using a droplet-based single-cell ATAC-sequencing (scATAC-seq) approach.
Contributor(s) Wang J, Adrianto I, Wu X, Zhou L, Mi Q
Citation(s) 37336875
Submission date Dec 11, 2019
Last update date Jun 29, 2023
Contact name Indra Adrianto
Phone 313-874-5999
Organization name Henry Ford Health System
Department Public Health Sciences
Street address 1 Ford Place
City Detroit
State/province MI
ZIP/Postal code 48202
Country USA
Platforms (1)
GPL24247 Illumina NovaSeq 6000 (Mus musculus)
Samples (5)
GSM4213749 Mouse thymus stage 0 Va14 iNKT scATAC-seq
GSM4213750 Mouse thymus stage 0 B6 iNKT scATAC-seq
GSM4213751 Mouse thymus stage 1 B6 iNKT scATAC-seq
BioProject PRJNA594923
SRA SRP236603

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Supplementary file Size Download File type/resource
GSE141825_RAW.tar 7.6 Gb (http)(custom) TAR (of BED, CSV, H5, MTX, TBI, TSV)
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Raw data are available in SRA
Processed data provided as supplementary file

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