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Series GSE141805 Query DataSets for GSE141805
Status Public on Feb 23, 2021
Title The Fusobacterium Nucleatum (Fn) in colorectal carcinogenesis
Organism Homo sapiens
Experiment type Expression profiling by high throughput sequencing
Summary To elucidate whether Fusobacterium Nucleatum(Fn) plays a role in colorectal cancer tumorigenesis, a RNA-seq analysis was performed to compare the gene expression profiles of Fn treated HCT116 colorectal cancer cell lines.
Overall design RNA-seq was performed in HCT116 colorectal cancer cells after Fusobacterium Nucleatum treatment.
Contributor(s) Lu S
Citation(s) 33318144
Submission date Dec 11, 2019
Last update date Feb 23, 2021
Contact name Haoyan Chen
Organization name Renji Hospital
Street address 145 Shandong Road
City Shanghai
State/province Shanghai
ZIP/Postal code 200001
Country China
Platforms (1)
GPL24676 Illumina NovaSeq 6000 (Homo sapiens)
Samples (6)
GSM4213584 HCT116 Cell line treated by Fn replicate 1
GSM4213585 HCT116 Cell line treated by Fn replicate 2
GSM4213586 HCT116 Cell line treated by Fn replicate 3
BioProject PRJNA594850
SRA SRP236877

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE141805_RAW.tar 1.8 Mb (http)(custom) TAR (of TXT)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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