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GEO help: Mouse over screen elements for information. |
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| Status |
Public on Sep 29, 2020 |
| Title |
Roles of human endogenous retroviruses and KRAB-zinc finger proteins in tumor progression |
| Organism |
Homo sapiens |
| Experiment type |
Expression profiling by high throughput sequencing
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| Summary |
This SuperSeries is composed of the SubSeries listed below.
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| Overall design |
Refer to individual Series
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| Citation(s) |
33087347 |
| Submission date |
Dec 10, 2019 |
| Last update date |
Nov 09, 2020 |
| Contact name |
Kei Sato |
| E-mail(s) |
su9ark@gmail.com
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| Phone |
81757514813
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| Organization name |
Kyoto University
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| Department |
Institute for Frontier Life and Medical Sciences
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| Lab |
Laboratory of Systems Virology
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| Street address |
53 Shogoinkawara-cho, Sakyo-ku
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| City |
Kyoto |
| State/province |
Kyoto |
| ZIP/Postal code |
6068507 |
| Country |
Japan |
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| Platforms (1) |
| GPL24676 |
Illumina NovaSeq 6000 (Homo sapiens) |
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| Samples (53)
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| GSM4196000 |
A549 in which HERV1 was excised, clone 1 |
| GSM4196001 |
A549 in which HERV1 was excised, clone 2 |
| GSM4196002 |
A549 in which HERV1 was excised, clone 3 |
| GSM4196003 |
A549 in which HERV1 was excised, clone 4 |
| GSM4196004 |
A549 in which HERV1 was excised, clone 5 |
| GSM4196005 |
A549 with non-target control gRNA, clone 1 |
| GSM4196006 |
A549 with non-target control gRNA, clone 2 |
| GSM4196007 |
A549 with non-target control gRNA, clone 3 |
| GSM4196008 |
A549 with non-target control gRNA, clone 4 |
| GSM4196009 |
A549 with non-target control gRNA, clone 5 |
| GSM4213496 |
A549_ZNF135 |
| GSM4213497 |
A549_ZNF141 |
| GSM4213498 |
A549_ZNF169 |
| GSM4213499 |
A549_ZNF182 |
| GSM4213500 |
A549_ZNF19 |
| GSM4213501 |
A549_ZNF248 |
| GSM4213502 |
A549_ZNF257 |
| GSM4213503 |
A549_ZNF26 |
| GSM4213504 |
A549_ZNF266 |
| GSM4213505 |
A549_ZNF273 |
| GSM4213506 |
A549_ZNF274 |
| GSM4213507 |
A549_ZNF30 |
| GSM4213508 |
A549_ZNF317 |
| GSM4213509 |
A549_ZNF320 |
| GSM4213510 |
A549_ZNF337 |
| GSM4213511 |
A549_ZNF33A |
| GSM4213512 |
A549_ZNF419 |
| GSM4213513 |
A549_ZNF44 |
| GSM4213514 |
A549_ZNF440 |
| GSM4213515 |
A549_ZNF445 |
| GSM4213516 |
A549_ZNF582 |
| GSM4213517 |
A549_ZNF605 |
| GSM4213518 |
A549_ZNF610 |
| GSM4213519 |
A549_ZNF611 |
| GSM4213520 |
A549_ZNF669 |
| GSM4213521 |
A549_ZNF682 |
| GSM4213522 |
A549_ZNF75D |
| GSM4213523 |
A549_ZNF8 |
| GSM4213524 |
A549_ZNF808 |
| GSM4213525 |
A549_ZNF846 |
| GSM4213526 |
A549_Empty_vector1 |
| GSM4213527 |
A549_Empty_vector2 |
| GSM4213528 |
A549_Empty_vector3 |
| GSM4421221 |
A549 with non-target control gRNA, clone 1, batch2 |
| GSM4421222 |
A549 with non-target control gRNA, clone 2, batch2 |
| GSM4421223 |
A549 with non-target control gRNA, clone 3, batch2 |
| GSM4421224 |
A549 with non-target control gRNA, clone 4, batch2 |
| GSM4421225 |
A549 with non-target control gRNA, clone 5, batch2 |
| GSM4421226 |
A549 in which HERV2 was excised, clone1, batch2 |
| GSM4421227 |
A549 in which HERV2 was excised, clone2, batch2 |
| GSM4421228 |
A549 in which HERV2 was excised, clone3, batch2 |
| GSM4421229 |
A549 in which HERV2 was excised, clone4, batch2 |
| GSM4421230 |
A549 in which HERV2 was excised, clone5, batch2 |
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| This SuperSeries is composed of the following SubSeries: |
| GSE141141 |
Identification of human endogenous retroviruses working as enhancers in cancer cells |
| GSE141802 |
Identification of potential target genes of KRAB zinc-finger proteins in cancer cells |
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| Relations |
| BioProject |
PRJNA594759 |
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