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Series GSE141665 Query DataSets for GSE141665
Status Public on Nov 27, 2020
Title Single-cell RNA-sequencing of γδ-T cells from peripheral blood and breast tumour microenvironment.
Organism Homo sapiens
Experiment type Expression profiling by high throughput sequencing
Summary γδ-T cells from PBMCs of healthy donors and immune cells in breast tumour microenvironment.
Overall design γδ-T cells were extracted from PBMCs of three healthy donors. Cells from donors HD4 and HD5 were pooled at a 1:1 ratio prior to loading onto 10X.
CD45+ cells were extracted from fresh breast tumours of two patients and loaded onto 10X.

Please note that raw data for the 'BC' samples are not provided (more details requested).
Contributor(s) Boufea K, Gonzalez-Huici V, Lindberg M, Symeonides S, Oikonomidou O, Batada N
Citation(s) 33268347
Submission date Dec 09, 2019
Last update date Jan 04, 2021
Contact name Nizar N. Batada
Organization name Institute for Genetics and Molecular Medicine, University of Edinburgh
Street address Crew Road
City Edinburgh
ZIP/Postal code EH4 2XU
Country United Kingdom
Platforms (2)
GPL16791 Illumina HiSeq 2500 (Homo sapiens)
GPL24676 Illumina NovaSeq 6000 (Homo sapiens)
Samples (4)
GSM4210786 HD4_HD5
GSM4210787 HD6
GSM4930079 BC1
BioProject PRJNA594341
SRA SRP235263

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE141665_RAW.tar 25.8 Mb (http)(custom) TAR (of TXT)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file
Raw data not provided for this record

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