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GEO accession:
Series GSE141139
Query DataSets for GSE141139
Status
Public on Jun 11, 2020
Title
Dynamic regulation of histone modifications and long-range chromosomal interactions during post-mitotic transcriptional reactivation
Organism
Homo sapiens
Experiment type
Other
Genome binding/occupancy profiling by high throughput sequencing
Expression profiling by high throughput sequencing
Summary
This SuperSeries is composed of the SubSeries listed below.
Overall design
Refer to individual Series
Citation(s)
32499403
Submission date
Nov 27, 2019
Last update date
Mar 28, 2022
Contact name
April Elizabeth Williams
E-mail(s)
apriljack06@gmail.com, awilliams@salk.edu
Phone
7345461645
Organization name
Salk Institute for Biological Studies
Department
IGC
Street address
10010 N Torrey Pines Rd
City
San Diego
State/province
California
ZIP/Postal code
92037
Country
USA
Platforms (2)
GPL18573
Illumina NextSeq 500 (Homo sapiens)
GPL24676
Illumina NovaSeq 6000 (Homo sapiens)
Samples (114)
Less...
More...
GSM4194449
0 min-Hi-C-r1
GSM4194450
0 min-Hi-C-r2
GSM4194451
35 min-Hi-C-r1
GSM4194452
35 min-Hi-C-r2
GSM4194453
60 min-Hi-C-r1
GSM4194454
60 min-Hi-C-r2
GSM4194455
90 min-Hi-C-r1
GSM4194456
90 min-Hi-C-r2
GSM4194457
120 min-Hi-C-r1
GSM4194458
120 min-Hi-C-r2
GSM4194459
180 min-Hi-C-r1
GSM4194460
180 min-Hi-C-r2
GSM4194461
240 min-Hi-C-r1
GSM4194462
240 min-Hi-C-r2
GSM4194463
360 min-Hi-C-r1
GSM4194464
360 min-Hi-C-r2
GSM4194653
U2OS H3K4me3-interphase-ChIP-seq-r1
GSM4194654
U2OS H3K4me3-interphase-ChIP-seq-r2
GSM4194655
U2OS H3K4me3-prometaphase-ChIP-seq-r1
GSM4194656
U2OS H3K4me3-prometaphase-ChIP-seq-r2
GSM4194657
U2OS H3K4me3-anaphase/telophase-ChIP-seq-r1
GSM4194658
U2OS H3K4me3-anaphase/telopphase-ChIP-seq-r2
GSM4194659
U2OS H3K27ac-interphase-ChIP-seq-r1
GSM4194660
U2OS H3K27ac-interphase-ChIP-seq-r2
GSM4194661
U2OS H3K27ac-prometaphase-ChIP-seq-r1
GSM4194662
U2OS H3K27ac-prometaphase-ChIP-seq-r2
GSM4194663
U2OS H3K27ac-anaphase/telophase-ChIP-seq-r1
GSM4194664
U2OS H3K27ac-anaphase/telopphase-ChIP-seq-r2
GSM4194665
U2OS H3K4me1-interphase-ChIP-seq-r1
GSM4194666
U2OS H3K4me1-interphase-ChIP-seq-r2
GSM4194667
U2OS H3K4me1-prometaphase-ChIP-seq-r1
GSM4194668
U2OS H3K4me1-prometaphase-ChIP-seq-r2
GSM4194669
U2OS H3K4me1-anaphase/telophase-ChIP-seq-r1
GSM4194670
U2OS H3K4me1-anaphase/telopphase-ChIP-seq-r2
GSM4194671
U2OS CTCF-interphase-ChIP-seq-r1
GSM4194672
U2OS CTCF-interphase-ChIP-seq-r2
GSM4194673
U2OS CTCF-prometaphase-ChIP-seq-r1
GSM4194674
U2OS CTCF-prometaphase-ChIP-seq-r2
GSM4194675
U2OS CTCF-anaphase/telophase-ChIP-seq-r1
GSM4194676
U2OS CTCF-anaphase/telopphase-ChIP-seq-r2
GSM4194677
U2OS Input-interphase-ChIP-seq-r1
GSM4194678
U2OS Input-prometaphase-ChIP-seq-r1
GSM4194679
U2OS Input-anaphase/telophase-ChIP-seq-r1
GSM4194680
U2OS Input-interphase-ChIP-seq-r2
GSM4194681
U2OS Input-prometaphase-ChIP-seq-r2
GSM4194682
U2OS Input-anaphase/telophase-ChIP-seq-r2
GSM4194683
U2OS Input-interphase-ChIP-seq-r3
GSM4194684
U2OS Input-prometaphase-ChIP-seq-r3
GSM4194685
U2OS Input-anaphase/telophase-ChIP-seq-r3
GSM4194686
RPE1 H3K4me3-interphase-ChIP-seq-r1
GSM4194687
RPE1 H3K4me3-interphase-ChIP-seq-r2
GSM4194688
RPE1 H3K4me3-prometaphase-ChIP-seq-r1
GSM4194689
RPE1 H3K4me3-prometaphase-ChIP-seq-r2
GSM4194690
RPE1 H3K4me3-anaphase/telophase-ChIP-seq-r1
GSM4194691
RPE1 H3K4me3-anaphase/telopphase-ChIP-seq-r2
GSM4194692
RPE1 H3K27ac-interphase-ChIP-seq-r1
GSM4194693
RPE1 H3K27ac-interphase-ChIP-seq-r2
GSM4194694
RPE1 H3K27ac-prometaphase-ChIP-seq-r1
GSM4194695
RPE1 H3K27ac-prometaphase-ChIP-seq-r2
GSM4194696
RPE1 H3K27ac-anaphase/telophase-ChIP-seq-r1
GSM4194697
RPE1 H3K27ac-anaphase/telopphase-ChIP-seq-r2
GSM4194698
RPE1 H3K4me1-interphase-ChIP-seq-r1
GSM4194699
RPE1 H3K4me1-interphase-ChIP-seq-r2
GSM4194700
RPE1 H3K4me1-prometaphase-ChIP-seq-r1
GSM4194701
RPE1 H3K4me1-prometaphase-ChIP-seq-r2
GSM4194702
RPE1 H3K4me1-anaphase/telophase-ChIP-seq-r1
GSM4194703
RPE1 H3K4me1-anaphase/telopphase-ChIP-seq-r2
GSM4194710
RPE1 Input-interphase-ChIP-seq-r1
GSM4194711
RPE1 Input-prometaphase-ChIP-seq-r1
GSM4194712
RPE1 Input-anaphase/telophase-ChIP-seq-r1
GSM4194713
RPE1 Input-interphase-ChIP-seq-r2
GSM4194714
RPE1 Input-prometaphase-ChIP-seq-r2
GSM4194715
RPE1 Input-anaphase/telophase-ChIP-seq-r2
GSM4194716
RPE1 Input-interphase-ChIP-seq-r3
GSM4194717
RPE1 Input-prometaphase-ChIP-seq-r3
GSM4194718
RPE1 Input-anaphase/telophase-ChIP-seq-r3
GSM4195955
NoEU-RNA-seq_r1
GSM4195956
NoEU-RNA-seq_r2
GSM4195957
Asynch-RNA-seq-r1
GSM4195958
Asynch-RNA-seq-r2
GSM4195959
0 min-RNA-seq-r1
GSM4195960
0 min-RNA-seq-r2
GSM4195961
35 min-RNA-seq-r1
GSM4195962
35 min-RNA-seq-r2
GSM4195963
60 min-RNA-seq-r1
GSM4195964
60 min-RNA-seq-r2
GSM4195965
90 min-RNA-seq-r1
GSM4195966
90 min-RNA-seq-r2
GSM4195967
120 min-RNA-seq-r1
GSM4195968
120 min-RNA-seq-r2
GSM4195969
180 min-RNA-seq-r1
GSM4195970
180 min-RNA-seq-r2
GSM4474693
NoEU-noA485-RNA-seq_r1
GSM4474694
NoEU-noA485-RNA-seq_r2
GSM4474695
EtOH-Prometaphase-RNA-seq_r1
GSM4474696
EtOH-Prometaphase-RNA-seq_r2
GSM4474697
A485-Prometaphase-RNA-seq_r1
GSM4474698
A485-Prometaphase-RNA-seq_r2
GSM4474699
EtOH-Cytokinesis-RNA-seq_r1
GSM4474700
EtOH-Cytokinesis-RNA-seq_r2
GSM4474701
A485-Cytokinesis-RNA-seq_r1
GSM4474702
A485-Cytokinesis-RNA-seq_r2
GSM4474703
EtOH-24h release-RNA-seq_r1
GSM4474704
EtOH-24h release-RNA-seq_r2
GSM4474705
A485-24h release-RNA-seq_r1
GSM4474706
A485-24h release-RNA-seq_r2
GSM4474707
Cytokinesis-EtOH-RNA-seq_r1
GSM4474708
Cytokinesis-EtOH-RNA-seq_r2
GSM4474709
Cytokinesis-A485-RNA-seq_r1
GSM4474710
Cytokinesis-A485-RNA-seq_r2
GSM4474711
3h G1-EtOH-RNA-seq_r1
GSM4474712
3h G1-EtOH-RNA-seq_r2
GSM4474713
3h G1-A485-RNA-seq_r1
GSM4474714
3h G1-A485-RNA-seq_r2
This SuperSeries is composed of the following SubSeries:
GSE141067
Dynamic regulation of histone modifications and long-range chromosomal interactions during post-mitotic transcriptional reactivation [Hi-C]
GSE141081
Dynamic regulation of histone modifications and long-range chromosomal interactions during post-mitotic transcriptional reactivation [ChIP-seq]
GSE141137
Dynamic regulation of histone modifications and long-range chromosomal interactions during post-mitotic transcriptional reactivation [EU-RNA-seq]
Relations
BioProject
PRJNA592189
Download family
Format
SOFT formatted family file(s)
SOFT
MINiML formatted family file(s)
MINiML
Series Matrix File(s)
TXT
Supplementary file
Size
Download
File type/resource
GSE141139_RAW.tar
26.2 Gb
(http)
(custom)
TAR (of BW, HIC, TXT)
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