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Series GSE140789 Query DataSets for GSE140789
Status Public on Mar 15, 2021
Title Transcriptome profiling of primary human aortic Vascular Smooth Muscle cells abrogated of NEIL3 mRNA via antisense oligonucleotides targeting NEIL3 exon 4
Organism Homo sapiens
Experiment type Expression profiling by high throughput sequencing
Summary We performed high-throughput RNA sequencing to characterize possible differences in the transcriptome of primary human aortic Vascular Smooth Muscle cells abrogated of NEIL3 mRNA via antisense oligonucleotides targeting NEIL3 exon 4, compared with control cells treated with a scramble version of the same antisense oligonucleotide
 
Overall design RNA-sequencing performed in primary human aortic Vascular Smooth Muscle cells from three (3) NEIL3 mRNA-abrogated, and two (2) treated with the scramble control, using Illumina NovaSeq 6000
 
Contributor(s) Quiles-Jiménez A, Yang K
Citation(s) 33714552
Submission date Nov 21, 2019
Last update date Mar 17, 2021
Contact name Kuan Yang
E-mail(s) Kuan.Yang@rr-research.no
Organization name Oslo University Hospital
Department Research Institute of Internal Medicine
Lab Section of Inflammatory Research
Street address Sognsvannsveien 20
City Oslo
ZIP/Postal code 0372
Country Norway
 
Platforms (1)
GPL24676 Illumina NovaSeq 6000 (Homo sapiens)
Samples (5)
GSM4185156 Aortic VSMCs, G1
GSM4185157 Aortic VSMCs, G2
GSM4185158 Aortic VSMCs, G3
This SubSeries is part of SuperSeries:
GSE140791 Role of NEIL3 in aortic Vascular Smooth Muscle cells
Relations
BioProject PRJNA590976
SRA SRP231157

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE140789_RAW.tar 225.3 Mb (http)(custom) TAR (of H5)
GSE140789_normalized_kallisto_abundance_all_samples.csv.gz 6.1 Mb (ftp)(http) CSV
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file
Processed data are available on Series record

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