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Series GSE140783 Query DataSets for GSE140783
Status Public on Dec 18, 2020
Title Histone deacetylase 9 promotes vascular inflammation by activating IKK
Organism Mus musculus
Experiment type Expression profiling by high throughput sequencing
Summary Comparison of TNFα activated BMDM from B6.129P2-Apoetm1Unc/J mice treated with the inhibitors TMP195 or TPCA-1.
Overall design Cells were treated for 1h with the respective inhibitors, followed by 24h stimulation with TNFα and subsequently lysed in Trizol.
Contributor(s) Asare Y, Campbell-James TA, Bokov Y, Yu LL, Prestel M, El Bounkari O, Roth S, Megens RT, Straub T, Thomas K, Yan G, Schneider M, Ziesch N, Tiedt S, Silvestre-Roig C, Braster Q, Huang Y, Malik R, Schneider M, Haffner C, Liesz A, Soehnlein O, Bernhagen J, Dichgans M
Citation(s) 32546048
Submission date Nov 21, 2019
Last update date Dec 21, 2020
Contact name Tobias Straub
Organization name LMU Munich
Department Biomedical Center, Bioinformatics
Street address Großhadener Str. 9
City Martinsried
ZIP/Postal code 82152
Country Germany
Platforms (1)
GPL18480 Illumina HiSeq 1500 (Mus musculus)
Samples (16)
GSM4185006 41_GTGCCA: DMSO replicate1
GSM4185007 42_TCGAGG: TNFα replicate1
GSM4185008 43_CACTAA: TMP195+TNFα replicate1
BioProject PRJNA590955
SRA SRP231152

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE140783_RAW.tar 4.2 Mb (http)(custom) TAR (of TAB)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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