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Status |
Public on Jul 09, 2020 |
Title |
Regulated snoRNA expression during differentiation corresponds with a change in ribosomal RNA pseudouridylation and altered pre-ribosomal RNA processing |
Organism |
Mus musculus |
Experiment type |
Non-coding RNA profiling by high throughput sequencing Non-coding RNA profiling by array
|
Summary |
This SuperSeries is composed of the SubSeries listed below.
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|
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Overall design |
Refer to individual Series
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Citation(s) |
32710630 |
|
Submission date |
Nov 18, 2019 |
Last update date |
Sep 15, 2020 |
Contact name |
Kathleen McCann |
E-mail(s) |
kathleen.mccann2@nih.gov
|
Organization name |
National Institute of Environmental Health Sciences
|
Street address |
111 TW Alexander Dr
|
City |
Durham |
State/province |
NC |
ZIP/Postal code |
27709 |
Country |
USA |
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|
Platforms (2) |
GPL19057 |
Illumina NextSeq 500 (Mus musculus) |
GPL27649 |
Nanostring Custom Codeset. Reporter Libraray file id: McCann_SnoRNA_2.rlf |
|
Samples (40)
|
GSM4146706 |
mESCs untreated T=0 rep1 (small RNA-seq) |
GSM4146707 |
mESCs untreated T=0 rep2 (small RNA-seq) |
GSM4146708 |
mESCs untreated T=0 rep3 (small RNA-seq) |
GSM4146709 |
mESCs +RA T=6 rep1 (small RNA-seq) |
GSM4146710 |
mESCs +RA T=6 rep2 (small RNA-seq) |
GSM4146711 |
mESCs +RA T=6 rep3 (small RNA-seq) |
GSM4175856 |
C2C12 cells, Nano104_C2C12 1 |
GSM4175857 |
C2C12 cells, Nano104_C2C12 2 |
GSM4175858 |
C2C12 cells, Nano104_C2C12 3 |
GSM4175859 |
C2C12 cells, Nano104_Myotubes 1 |
GSM4175860 |
C2C12 cells, Nano104_Myotubes 2 |
GSM4175861 |
C2C12 cells, Nano104_Myotubes 3 |
GSM4175912 |
SSC1 |
GSM4175913 |
SSC2 |
GSM4175914 |
SSC3 |
GSM4175915 |
SSC4 |
GSM4175916 |
NIH3T3 1 |
GSM4175917 |
NIH3T3 2 |
GSM4175918 |
NIH3T3 3 |
GSM4175919 |
RAW 1 |
GSM4175920 |
RAW 2 |
GSM4175921 |
RAW 3 |
GSM4175922 |
ESCs, RA1 |
GSM4175923 |
ESCs, RA2 |
GSM4175924 |
ESCs, RA3 |
GSM4175925 |
ESC1 |
GSM4175926 |
ESC2 |
GSM4175927 |
ESC3 |
GSM4175928 |
ESCs, aMHC1 |
GSM4175929 |
ESCs, aMHC2 |
GSM4175930 |
ESCs, aMHC3 |
GSM4175931 |
Cardiomyo1 |
GSM4175932 |
Cardiomyo2 |
GSM4175933 |
Cardiomyo3 |
GSM4489536 |
C2C12 Undifferentiated rep1 [RNA-seq] |
GSM4489539 |
C2C12 Undifferentiated rep2 [RNA-seq] |
GSM4489541 |
C2C12 Undifferentiated rep3 [RNA-seq] |
GSM4489544 |
C2C12 Myotubes rep1 [RNA-seq] |
GSM4489545 |
C2C12 Myotubes rep2 [RNA-seq] |
GSM4489546 |
C2C12 Myotubes rep3 [RNA-seq] |
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This SuperSeries is composed of the following SubSeries: |
GSE139812 |
Regulated snoRNA expression during differentiation corresponds with a change in ribosomal RNA pseudouridylation and altered pre-ribosomal RNA processing [RNA-seq and ncRNA-seq] |
GSE140618 |
Regulated snoRNA expression during differentiation corresponds with a change in ribosomal RNA pseudouridylation and altered pre-ribosomal RNA processing [Nano104] |
GSE140622 |
Regulated snoRNA expression during differentiation corresponds with a change in ribosomal RNA pseudouridylation and altered pre-ribosomal RNA processing [Nano77] |
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Relations |
BioProject |
PRJNA590255 |