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Series GSE140363 Query DataSets for GSE140363
Status Public on Apr 14, 2020
Title Defining the relative and combined contribution of CTCF and CTCFL to genomic regulation
Organism Mus musculus
Experiment type Expression profiling by high throughput sequencing
Genome binding/occupancy profiling by high throughput sequencing
Summary We analyzed the impact of CTCFL and CTCF-CTCFL fusion proteins in the presence and absence of CTCF to obtain insight into the individual functional contributions of the zinc finger and N/C terminal domains
Overall design ChIP seq, RNA seq, HiC
Contributor(s) Skok JA, Nishana M, Rodriguez-Hernaez J
Citation(s) 32393311
NIH grant(s)
Grant ID Grant title Affiliation Name
R35 GM122515 Mechanisms Underlying the Control of Recombination and Gene Regulation NEW YORK UNIVERSITY SCHOOL OF MEDICINE Jane Amanda Skok
P01 CA229086 The impact of changes in chromatin architecture on cancer phenotypes and tumor progression NEW YORK UNIVERSITY SCHOOL OF MEDICINE Jane Amanda Skok
Submission date Nov 13, 2019
Last update date May 26, 2020
Contact name Nishana Mayilaadumveettil
Phone 2122630503
Organization name NYU Langone health
Department Pathology
Lab Skoklab
Street address 31st Street & East River DR, Receiving Department BLDG Smilow Floor 03, RM 307 (Jane Skok Laboratory)
City New York
State/province New York
ZIP/Postal code 10016
Country USA
Platforms (2)
GPL21103 Illumina HiSeq 4000 (Mus musculus)
GPL24247 Illumina NovaSeq 6000 (Mus musculus)
Samples (122)
GSM4159991 Flag ChIP CTCF D R1
GSM4159992 Flag ChIP CTCF D R2
GSM4159993 Flag ChIP CTCF ID R1
BioProject PRJNA589339
SRA SRP229756

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource 24.1 Mb (ftp)(http) BW 19.6 Mb (ftp)(http) BW 23.0 Mb (ftp)(http) BW 22.0 Mb (ftp)(http) BW 15.9 Mb (ftp)(http) BW 12.4 Mb (ftp)(http) BW 14.6 Mb (ftp)(http) BW 16.2 Mb (ftp)(http) BW 27.4 Mb (ftp)(http) BW 25.1 Mb (ftp)(http) BW 29.4 Mb (ftp)(http) BW 21.6 Mb (ftp)(http) BW 14.3 Mb (ftp)(http) BW 16.0 Mb (ftp)(http) BW 13.8 Mb (ftp)(http) BW
GSE140363_RAW.tar 13.1 Gb (http)(custom) TAR (of BED, BEDGRAPH, BROADPEAK, BW, HIC, NARROWPEAK)
GSE140363_RNA.seq_counts.normalized.csv.gz 2.4 Mb (ftp)(http) CSV
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file
Processed data are available on Series record

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