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GEO accession:
Series GSE140105
Query DataSets for GSE140105
Status
Public on Nov 08, 2019
Title
AlkB-facilitated RNA methylation sequencing (ARM-seq) and Demethylase-thermostable group II intron RT tRNA sequencing (DM-tRNA-seq)
Organism
Mus musculus
Experiment type
Non-coding RNA profiling by high throughput sequencing
Summary
This SuperSeries is composed of the SubSeries listed below.
Overall design
Refer to individual Series
Citation missing
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Submission date
Nov 07, 2019
Last update date
Nov 10, 2019
Contact name
Todd Lowe
E-mail(s)
aimannin@ucsc.edu
Organization name
University of California Santa Cruz
Department
Biomolecular Engineering and Bioinformatics
Lab
Lowe Lab
Street address
1156 High Street
City
Santa Cruz
State/province
CA
ZIP/Postal code
95064
Country
USA
Platforms (2)
GPL16417
Illumina MiSeq (Mus musculus)
GPL19057
Illumina NextSeq 500 (Mus musculus)
Samples (76)
Less...
More...
GSM4154300
Mouse Thymus M4 -AlkB ARM-seq
GSM4154301
Mouse Thymus M5 -AlkB ARM-seq
GSM4154302
Mouse Thymus M6 -AlkB ARM-seq
GSM4154303
Mouse Thymus M4 +AlkB ARM-seq
GSM4154304
Mouse Thymus M5 +AlkB ARM-seq
GSM4154305
Mouse Thymus M6 +AlkB ARM-seq
GSM4154306
Mouse Spleen M4 -AlkB ARM-seq
GSM4154307
Mouse Spleen M5 -AlkB ARM-seq
GSM4154308
Mouse Spleen M6 -AlkB ARM-seq
GSM4154309
Mouse Spleen M4 +AlkB ARM-seq
GSM4154310
Mouse Spleen M5 +AlkB ARM-seq
GSM4154311
Mouse Spleen M6 +AlkB ARM-seq
GSM4154312
Mouse Spleen M4 -AlkB DM-tRNA-seq
GSM4154313
Mouse Spleen M5 -AlkB DM-tRNA-seq
GSM4154314
Mouse Spleen M6 -AlkB DM-tRNA-seq
GSM4154315
Mouse Spleen M4 +AlkB DM-tRNA-seq
GSM4154316
Mouse Spleen M5 +AlkB DM-tRNA-seq
GSM4154317
Mouse Spleen M6 +AlkB DM-tRNA-seq
GSM4154318
Mouse Liver M4 -AlkB ARM-seq
GSM4154319
Mouse Liver M5 -AlkB ARM-seq
GSM4154320
Mouse Liver M4 +AlkB ARM-seq
GSM4154321
Mouse Liver M5 +AlkB ARM-seq
GSM4154322
Mouse Liver M4 -AlkB DM-tRNA-seq
GSM4154323
Mouse Liver M5 -AlkB DM-tRNA-seq
GSM4154324
Mouse Liver M6 -AlkB DM-tRNA-seq
GSM4154325
Mouse Liver M4 +AlkB DM-tRNA-seq
GSM4154326
Mouse Liver M5 +AlkB DM-tRNA-seq
GSM4154327
Mouse Liver M6 +AlkB DM-tRNA-seq
GSM4154328
Mouse Kidney M4 -AlkB ARM-seq
GSM4154329
Mouse Kidney M5 -AlkB ARM-seq
GSM4154330
Mouse Kidney M6 -AlkB ARM-seq
GSM4154331
Mouse Kidney M4 +AlkB ARM-seq
GSM4154332
Mouse Kidney M5 +AlkB ARM-seq
GSM4154333
Mouse Kidney M6 +AlkB ARM-seq
GSM4154334
Mouse Heart M4 -AlkB DM-tRNA-seq
GSM4154335
Mouse Heart M5 -AlkB DM-tRNA-seq
GSM4154336
Mouse Heart M6 -AlkB DM-tRNA-seq
GSM4154337
Mouse Heart M4 +AlkB DM-tRNA-seq
GSM4154338
Mouse Heart M5 +AlkB DM-tRNA-seq
GSM4154339
Mouse Heart M6 +AlkB DM-tRNA-seq
GSM4154340
Mouse Brain M4 -AlkB ARM-seq
GSM4154341
Mouse Brain M5 -AlkB ARM-seq
GSM4154342
Mouse Brain M6 -AlkB ARM-seq
GSM4154343
Mouse Brain M4 +AlkB ARM-seq
GSM4154344
Mouse Brain M5 +AlkB ARM-seq
GSM4154345
Mouse Brain M6 +AlkB ARM-seq
GSM4154346
Mouse Brain M4 -AlkB DM-tRNA-seq
GSM4154347
Mouse Brain M5 -AlkB DM-tRNA-seq
GSM4154348
Mouse Brain M6 -AlkB DM-tRNA-seq
GSM4154349
Mouse Brain M4 +AlkB DM-tRNA-seq
GSM4154350
Mouse Brain M5 +AlkB DM-tRNA-seq
GSM4154351
Mouse Brain M6 +AlkB DM-tRNA-seq
GSM4154352
Mouse Proximal Colon M4 -AlkB ARM-seq
GSM4154353
Mouse Proximal Colon M5 -AlkB ARM-seq
GSM4154354
Mouse Proximal Colon M6 -AlkB ARM-seq
GSM4154355
Mouse Proximal Colon M4 +AlkB ARM-seq
GSM4154356
Mouse Proximal Colon M5 +AlkB ARM-seq
GSM4154357
Mouse Proximal Colon M6 +AlkB ARM-seq
GSM4154358
Mouse Proximal Colon M4 -AlkB DM-tRNA-seq
GSM4154359
Mouse Proximal Colon M5 -AlkB DM-tRNA-seq
GSM4154360
Mouse Proximal Colon M6 -AlkB DM-tRNA-seq
GSM4154361
Mouse Proximal Colon M4 +AlkB DM-tRNA-seq
GSM4154362
Mouse Proximal Colon M5 +AlkB DM-tRNA-seq
GSM4154363
Mouse Proximal Colon M6 +AlkB DM-tRNA-seq
GSM4154436
Mouse Distal Colon M4 -AlkB ARM-seq
GSM4154437
Mouse Distal Colon M5 -AlkB ARM-seq
GSM4154438
Mouse Distal Colon M6 -AlkB ARM-seq
GSM4154439
Mouse Distal Colon M4 +AlkB ARM-seq
GSM4154440
Mouse Distal Colon M5 +AlkB ARM-seq
GSM4154441
Mouse Distal Colon M6 +AlkB ARM-seq
GSM4154442
Mouse Distal Colon M4 -AlkB DM-tRNA-seq
GSM4154443
Mouse Distal Colon M5 -AlkB DM-tRNA-seq
GSM4154444
Mouse Distal Colon M6 -AlkB DM-tRNA-seq
GSM4154445
Mouse Distal Colon M4 +AlkB DM-tRNA-seq
GSM4154446
Mouse Distal Colon M5 +AlkB DM-tRNA-seq
GSM4154447
Mouse Distal Colon M6 +AlkB DM-tRNA-seq
This SuperSeries is composed of the following SubSeries:
Less...
More...
GSE140094
AlkB-facilitated RNA methylation sequencing (ARM-seq) and Demethylase-thermostable group II intron RT tRNA sequencing (DM-tRNA-seq) [Thymus]
GSE140095
AlkB-facilitated RNA methylation sequencing (ARM-seq) and Demethylase-thermostable group II intron RT tRNA sequencing (DM-tRNA-seq) [spleen]
GSE140096
AlkB-facilitated RNA methylation sequencing (ARM-seq) and Demethylase-thermostable group II intron RT tRNA sequencing (DM-tRNA-seq) [liver]
GSE140097
AlkB-facilitated RNA methylation sequencing (ARM-seq) and Demethylase-thermostable group II intron RT tRNA sequencing (DM-tRNA-seq) [kidney]
GSE140098
AlkB-facilitated RNA methylation sequencing (ARM-seq) and Demethylase-thermostable group II intron RT tRNA sequencing (DM-tRNA-seq) [heart]
GSE140099
AlkB-facilitated RNA methylation sequencing (ARM-seq) and Demethylase-thermostable group II intron RT tRNA sequencing (DM-tRNA-seq) [brain]
GSE140100
AlkB-facilitated RNA methylation sequencing (ARM-seq) and Demethylase-thermostable group II intron RT tRNA sequencing (DM-tRNA-seq) [Proximal Colon]
GSE140103
AlkB-facilitated RNA methylation sequencing (ARM-seq) and Demethylase-thermostable group II intron RT tRNA sequencing (DM-tRNA-seq) [Distal Colon]
Relations
BioProject
PRJNA588262
Download family
Format
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TXT
Supplementary file
Size
Download
File type/resource
GSE140105_RAW.tar
262.5 Mb
(http)
(custom)
TAR (of BW)
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