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| Status |
Public on May 26, 2020 |
| Title |
LOC90024-encoded small protein SRSP regulates mRNA splicing |
| Organism |
Homo sapiens |
| Experiment type |
Expression profiling by high throughput sequencing
Other
|
| Summary |
The mRNA transcriptome profiling and splicing profiling mediated by LOC90024 and LOC90024-encoded small protein SRSP were investigated by RNA-seq.
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| |
|
| Overall design |
The mRNA profiles and mRNA splicing profiles of colon cancer cells HCT-116 (NC), HCT-116 with stably expressing LOC90024 ORF for encoding small protein SRSP (ORF), and HCT-116 with stably expressing 5'UTR-ORFmut in which start code ATG for encoding SRSP was mutataed to ATT (MUT), were generated by RNA-sequencing (RNA-seq), in triplicate, using Illumina Novaseq6000.
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| |
|
| Contributor(s) |
Yan G, Meng N, Chen M |
| Citation(s) |
32440474 |
| Submission date |
Oct 25, 2019 |
| Last update date |
May 26, 2020 |
| Contact name |
Guang-Rong Yan |
| E-mail(s) |
jxygr007@yahoo.com
|
| Organization name |
Biomedicine Research Center, the Third Affiliated Hospital of Guangzhou Medical University
|
| Street address |
63 Duobao Road
|
| City |
Guangzhou |
| State/province |
Guangdong |
| ZIP/Postal code |
510150 |
| Country |
China |
| |
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| Platforms (1) |
| GPL24676 |
Illumina NovaSeq 6000 (Homo sapiens) |
|
| Samples (9)
|
|
| Relations |
| BioProject |
PRJNA579559 |
| SRA |
SRP227009 |
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