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GEO accession:
Series GSE139360
Query DataSets for GSE139360
Status
Public on Nov 22, 2019
Title
Transcriptomic, epigenetic and functional analyses implicate neutrophil diversity in the pathogenesis of systemic lupus erythematosus
Organism
Homo sapiens
Experiment type
Expression profiling by high throughput sequencing
Genome binding/occupancy profiling by high throughput sequencing
Summary
This SuperSeries is composed of the SubSeries listed below.
Overall design
Refer to individual Series
Citation(s)
31754025
Submission date
Oct 24, 2019
Last update date
Feb 22, 2020
Contact name
Hong-wei Sun
Organization name
NIAMS
Department
Office of Science & Technology
Lab
Biodata Mining & Discovery Section
Street address
9000 Rockville Pile
City
Bethesda
State/province
MD
ZIP/Postal code
20892
Country
USA
Platforms (2)
GPL16791
Illumina HiSeq 2500 (Homo sapiens)
GPL21290
Illumina HiSeq 3000 (Homo sapiens)
Samples (78)
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More...
GSM4138684
NDN_ctrl_01 [RNA-seq]
GSM4138685
NDN_ctrl_02 [RNA-seq]
GSM4138686
NDN_ctrl_03 [RNA-seq]
GSM4138687
NDN_ctrl_04 [RNA-seq]
GSM4138688
NDN_ctrl_05 [RNA-seq]
GSM4138689
NDN_ctrl_06 [RNA-seq]
GSM4138690
NDN_ctrl_07 [RNA-seq]
GSM4138691
NDN_ctrl_08 [RNA-seq]
GSM4138692
NDN_ctrl_09 [RNA-seq]
GSM4138693
NDN_ctrl_10 [RNA-seq]
GSM4138694
NDN_ctrl_11 [RNA-seq]
GSM4138695
NDN_SLE_01 [RNA-seq]
GSM4138696
NDN_SLE_02 [RNA-seq]
GSM4138697
NDN_SLE_03 [RNA-seq]
GSM4138698
NDN_SLE_04 [RNA-seq]
GSM4138699
NDN_SLE_05 [RNA-seq]
GSM4138700
NDN_SLE_06 [RNA-seq]
GSM4138701
NDN_SLE_07 [RNA-seq]
GSM4138702
NDN_SLE_08 [RNA-seq]
GSM4138703
NDN_SLE_09 [RNA-seq]
GSM4138704
NDN_SLE_10 [RNA-seq]
GSM4138705
NDN_SLE_11 [RNA-seq]
GSM4138706
LDG_SLE_01_mat [RNA-seq]
GSM4138707
LDG_SLE_02_imm [RNA-seq]
GSM4138708
LDG_SLE_03_mat [RNA-seq]
GSM4138709
LDG_SLE_04_mat [RNA-seq]
GSM4138710
LDG_SLE_05_mat [RNA-seq]
GSM4138711
LDG_SLE_06_imm [RNA-seq]
GSM4138712
LDG_SLE_07_imm [RNA-seq]
GSM4138713
LDG_SLE_08_mat [RNA-seq]
GSM4138714
LDG_SLE_09_mat [RNA-seq]
GSM4138715
LDG_SLE_10_mat [RNA-seq]
GSM4138716
LDG_SLE_11_mat [RNA-seq]
GSM4138717
NDN_01_LE [RNA-seq]
GSM4138718
NDN_02_LE [RNA-seq]
GSM4138719
NDN_03_LE [RNA-seq]
GSM4138720
NDN_04_PPAR [RNA-seq]
GSM4138721
NDN_05_PPAR [RNA-seq]
GSM4138722
NDN_06_PPAR [RNA-seq]
GSM4138723
LDG_01_LE_CD10_pos [RNA-seq]
GSM4138724
LDG_02_LE_CD10_pos [RNA-seq]
GSM4138725
LDG_03_LE_CD10_pos [RNA-seq]
GSM4138726
LDG_04_PPAR_CD10_pos [RNA-seq]
GSM4138727
LDG_05_PPAR_CD10_pos [RNA-seq]
GSM4138728
LDG_06_PPAR_CD10_pos [RNA-seq]
GSM4138729
LDG_01_LE_CD10_neg [RNA-seq]
GSM4138730
LDG_02_LE_CD10_neg [RNA-seq]
GSM4138731
LDG_03_LE_CD10_neg [RNA-seq]
GSM4138732
LDG_04_PPAR_CD10_neg [RNA-seq]
GSM4138733
LDG_05_PPAR_CD10_neg [RNA-seq]
GSM4138734
LDG_06_PPAR_CD10_neg [RNA-seq]
GSM4138735
NDN_ctrl_01 [ATAC-seq]
GSM4138736
NDN_ctrl_02 [ATAC-seq]
GSM4138737
NDN_ctrl_03 [ATAC-seq]
GSM4138738
NDN_ctrl_04 [ATAC-seq]
GSM4138739
NDN_ctrl_05 [ATAC-seq]
GSM4138740
NDN_ctrl_06 [ATAC-seq]
GSM4138741
NDN_ctrl_07 [ATAC-seq]
GSM4138742
NDN_ctrl_08 [ATAC-seq]
GSM4138743
NDN_SLE_01 [ATAC-seq]
GSM4138744
NDN_SLE_02 [ATAC-seq]
GSM4138745
NDN_SLE_03 [ATAC-seq]
GSM4138746
NDN_SLE_04 [ATAC-seq]
GSM4138747
NDN_SLE_05 [ATAC-seq]
GSM4138748
NDN_SLE_06 [ATAC-seq]
GSM4138749
NDN_SLE_07 [ATAC-seq]
GSM4138750
NDN_SLE_08 [ATAC-seq]
GSM4138751
LDG_SLE_01_mat [ATAC-seq]
GSM4138752
LDG_SLE_02_imm [ATAC-seq]
GSM4138753
LDG_SLE_03_mat [ATAC-seq]
GSM4138754
LDG_SLE_04_mat [ATAC-seq]
GSM4138755
LDG_SLE_05_mat [ATAC-seq]
GSM4138756
LDG_SLE_06_imm [ATAC-seq]
GSM4138757
LDG_SLE_07_imm [ATAC-seq]
GSM4138758
LDG_SLE_08_mat [ATAC-seq]
GSM4217718
scRNA_SLE1_PBMC
GSM4217719
scRNA_SLE2_PBMC
GSM4217720
scRNA_SLE3_PBMC
This SuperSeries is composed of the following SubSeries:
GSE139358
Transcriptomic, epigenetic and functional analyses implicate neutrophil diversity in the pathogenesis of systemic lupus erythematosus [RNA-seq]
GSE139359
Transcriptomic, epigenetic and functional analyses implicate neutrophil diversity in the pathogenesis of systemic lupus erythematosus [ATAC-seq]
GSE142016
Transcriptomic, epigenetic and functional analyses implicate neutrophil diversity in the pathogenesis of systemic lupus erythematosus [scRNA-seq]
Relations
BioProject
PRJNA579370
Download family
Format
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TXT
Supplementary file
Size
Download
File type/resource
GSE139360_RAW.tar
12.9 Gb
(http)
(custom)
TAR (of BW, MTX, TSV)
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