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Series GSE139343 Query DataSets for GSE139343
Status Public on Jun 19, 2020
Title Essential and Opposite Roles of ARID1A in Coordinating Human Cardiogenesis and Neurogenesis from Pluripotent Stem Cells
Organism Homo sapiens
Experiment type Genome binding/occupancy profiling by high throughput sequencing
Expression profiling by high throughput sequencing
Summary This SuperSeries is composed of the SubSeries listed below.
Overall design Refer to individual Series
Citation(s) 32646524
Submission date Oct 24, 2019
Last update date Jul 16, 2020
Contact name Lei Yang
Phone (317) 278-5233
Organization name Indiana University School of Medicine
Department Department of Pediatrics
Street address 1044 W. Walnut St.
City Indianapolis
State/province Indiana
ZIP/Postal code 46202
Country USA
Platforms (2)
GPL18573 Illumina NextSeq 500 (Homo sapiens)
GPL24676 Illumina NovaSeq 6000 (Homo sapiens)
Samples (8)
GSM4134962 ARID1A_ChIPSeq
GSM4134963 1% Input
GSM4138221 WT_diff T4_ATAC-seq
This SuperSeries is composed of the following SubSeries:
GSE139260 Genome-wide maps of ARID1A binding genes in H9 human embryonic stem cells.
GSE139329 Assay for Transposase Accessible Chromatin with high-throughput sequencing (ATAC-seq) revealed genomic chromatin accessibilities change induced by loss of ARID1A in differentiated (day 4) H9 hESCs
GSE139342 Single cell RNA-seq revealed different cell types induced by loss of ARID1A in undifferentiated and differentiation (day 10) H9 hESCs.
BioProject PRJNA579345

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE139343_RAW.tar 9.1 Gb (http)(custom) TAR (of BW, NARROWPEAK, TAR)
SRA Run SelectorHelp

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