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Series GSE139117 Query DataSets for GSE139117
Status Public on Feb 20, 2020
Title Analysis of CRE-mediated chromatin interactions by CAPTURE2.0
Organisms Homo sapiens; Mus musculus
Experiment type Expression profiling by high throughput sequencing
Genome binding/occupancy profiling by high throughput sequencing
Summary This SuperSeries is composed of the SubSeries listed below.
Overall design Refer to individual Series
Citation(s) 32138752
Submission date Oct 18, 2019
Last update date Mar 16, 2020
Contact name Jian Xu
Phone 9015955208
Organization name St. Jude Children's Research Hospital
Department Pathology
Street address 262 Danny Thomas Place, MS 345
City Memphis
State/province Tennessee
ZIP/Postal code 38105
Country USA
Platforms (2)
GPL18573 Illumina NextSeq 500 (Homo sapiens)
GPL19057 Illumina NextSeq 500 (Mus musculus)
Samples (105)
GSM4131032 ATAC-seq_G1E-ER4_0hr_rep1
GSM4131033 ATAC-seq_G1E-ER4_0hr_rep2
GSM4131034 ATAC-seq_G1E-ER4_2hr_rep1
This SuperSeries is composed of the following SubSeries:
GSE139105 ATAC-seq analysis in G1E-ER4 cells during erythroid differentiation
GSE139109 CAPTURE-3C-seq analysis of cis-element-mediated long-range DNA interactions in K562 and G1E-ER4 cells
GSE139111 ChIP-seq analysis of H3K4me3, H3K27ac and CTCF in undifferentiated and differentiated G1E-ER4 cells
BioProject PRJNA578408

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE139117_RAW.tar 6.1 Gb (http)(custom) TAR (of BED, BW, WIG)
SRA Run SelectorHelp

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