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Series GSE138733 Query DataSets for GSE138733
Status Public on Sep 01, 2020
Title Comparison of bioprinted kidney organoids in different conformations
Organism Homo sapiens
Experiment type Expression profiling by high throughput sequencing
Summary Bulk RNA-seq comparison of kidney organoids bioprinted in 3 different conformations with varying starting cell densities. Density is dictated by the ratio of bioprinter tip movement to the amount of extrusion, where higher ratios spread cells over a larger surface area. We compare organoids printed with no movement ('blob', ratio 0) to those with moderate ('line 3', ratio 20) or high movement ('line 1', ratio 40).
Overall design Each condition consistes of 3 replicate organoids, where each replicate was generated from a distinct well of differentiated iPSCs.
Web link
Contributor(s) Lawlor KT, Vanslambrouck JM, Little MH
Citation(s) 33230326
Submission date Oct 10, 2019
Last update date Mar 30, 2022
Contact name Kynan Thomas Lawlor
Organization name Murdoch Children's Research Institute
Street address Murdoch Children's Research Institute, Flemington Road
City Parkville
State/province VIC
ZIP/Postal code 3052
Country Australia
Platforms (1)
GPL24676 Illumina NovaSeq 6000 (Homo sapiens)
Samples (9)
GSM4117189 dot-1
GSM4117190 dot-2
GSM4117191 dot-3
BioProject PRJNA576921
SRA SRP225115

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SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE138733_counts.csv.gz 638.6 Kb (ftp)(http) CSV
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Raw data are available in SRA
Processed data are available on Series record

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