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Series GSE138063 Query DataSets for GSE138063
Status Public on Feb 10, 2020
Title Photoactivatable-Ribonucleotide-Enhanced Crosslinking and Immunoprecipitation (PAR-CLIP) of RNA-binding proteins (RBPs), IGF2BP1 and IGF2BP3 in the K562 CML-derived cell line
Organism Homo sapiens
Experiment type Other
Summary Transcriptome-wide profiling of RNA-binding by IGF2BP1 and IGF2BP3 in the K562 cell line. Binding sites are characterized by T-to-C cross-linking mutations, depth and location on transcript
Overall design Two biological replicates of PAR-CLIP are provided each for IGF2BP1 and IGF2BP3
Contributor(s) Wong M, Chim B, Hafner M, Muljo SA
Citation(s) 31768017
Submission date Sep 26, 2019
Last update date Feb 12, 2020
Contact name Stefan A Muljo
Organization name NIH/NIAID
Street address 10 CENTER DR RM 11N306
City Bethesda
State/province MD
ZIP/Postal code 20892
Country USA
Platforms (1)
GPL21290 Illumina HiSeq 3000 (Homo sapiens)
Samples (4)
GSM4097650 IGF2BP1_1
GSM4097651 IGF2BP1_2
GSM4097652 IGF2BP3_1
BioProject PRJNA574408
SRA SRP223437

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Supplementary file Size Download File type/resource
GSE138063_RAW.tar 59.6 Mb (http)(custom) TAR (of BED, BW)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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