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Series GSE138042 Query DataSets for GSE138042
Status Public on Dec 01, 2019
Title RNA sequencing profiles for thyroid tumor tissue specimens
Organism Homo sapiens
Experiment type Non-coding RNA profiling by high throughput sequencing
Expression profiling by high throughput sequencing
Summary There is a challenge of thyroid cancer versus benign follicular denoma differential diagnostics using fine-needle biopsy. RNA expression profiles can be used to identify biomarkers suitable for molecular diagnostics. Here we present raw RNA sequencing data obtained during Oncobox platform observational study for 96 human pathological thyroid biosamples. Data are compatible with Oncobox Atlas of Normal Tissue Expression (ANTE) database including profiles for healthy thyroid tissues. . The data provided are helpful to those implicated in thyroid cancer research and diagnostics, and in comparative analyses of human cancers.
Overall design We performed mRNA sequencing of 97 samples of thyroid cancer. Additionally, we performed microRNA sequencing of 34 samples of thyroid cancer.
Web link
Contributor(s) Nikitin D, Garazha A, Suntsova M, Sorokin M, Buzdin A
Citation(s) 33748479
Submission date Sep 26, 2019
Last update date Mar 23, 2021
Contact name Daniil Nikitin
Phone 89295743391
Organization name Shemyakin-Ovchinnikov Institute of Bioorganic Chemistry
Street address Miklucho-Maklaya
City Moscow
ZIP/Postal code 117198
Country Russia
Platforms (1)
GPL21290 Illumina HiSeq 3000 (Homo sapiens)
Samples (121)
GSM4097216 Thyroid tumor, TC11 (miRNA-seq)
GSM4097217 Thyroid tumor, TC112 (miRNA-seq)
GSM4097218 Thyroid tumor, TC12 (miRNA-seq)
BioProject PRJNA574551
SRA SRP223384

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SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE138042_mRNA_seq_only_added.csv.gz 316.8 Kb (ftp)(http) CSV
GSE138042_mRNA_seq_thyroid.csv.gz 3.2 Mb (ftp)(http) CSV
GSE138042_microRNA_counts_forGEO.csv.gz 32.8 Kb (ftp)(http) CSV
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Raw data are available in SRA
Processed data are available on Series record

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