GEO Publications
Handout
NAR 2013 (latest)
NAR 2002 (original)
All publications
FAQ
MIAME
Email GEO
NCBI
>
GEO
>
Accession Display
Not logged in |
Login
GEO help:
Mouse over screen elements for information.
Scope:
Self
Platform
Samples
Series
Family
Format:
HTML
SOFT
MINiML
Amount:
Brief
Quick
GEO accession:
Series GSE137878
Query DataSets for GSE137878
Status
Public on May 28, 2020
Title
Regulation of RNA localization by FMR1
Organisms
Homo sapiens
;
Mus musculus
Experiment type
Expression profiling by high throughput sequencing
Summary
We use subcellular fractionation to probe the regulation of RNA localization by FMR1 in neuronal cells.
Overall design
Examination of RNA abundances in soma and neurite compartments of wildtype and FMR1 null neuronal cells
Contributor(s)
Taliaferro M
Citation(s)
32510328
NIH grant(s)
Grant ID
Grant title
Affiliation
Name
R35 GM133385
Understanding the regulatory language of RNA localization
UNIVERSITY OF COLORADO DENVER
Jefferson Matthew Taliaferro
Submission date
Sep 23, 2019
Last update date
Jun 16, 2020
Contact name
Matthew Taliaferro
Organization name
University of Colorado Anschutz Medical Campus
Department
Biology
Street address
12801 E 17th Ave, RC1 South Room 10403D
City
Aurora
State/province
CO
ZIP/Postal code
80045
Country
USA
Platforms (3)
GPL19057
Illumina NextSeq 500 (Mus musculus)
GPL24247
Illumina NovaSeq 6000 (Mus musculus)
GPL24676
Illumina NovaSeq 6000 (Homo sapiens)
Samples (70)
Less...
More...
GSM4090799
CAD WT Soma A
GSM4090800
CAD WT Soma B
GSM4090801
CAD WT Soma C
GSM4090802
CAD WT Neurite A
GSM4090803
CAD WT Neurite B
GSM4090804
CAD WT Neurite C
GSM4090805
CAD KO Soma A
GSM4090806
CAD KO Soma B
GSM4090807
CAD KO Soma C
GSM4090808
CAD KO Neurite A
GSM4090809
CAD KO Neurite B
GSM4090810
CAD KO Neurite C
GSM4090811
Unaffected iPS Soma A
GSM4090812
Unaffected iPS Soma B
GSM4090813
Unaffected iPS Soma C
GSM4090814
Unaffected iPS Soma D
GSM4090815
Unaffected iPS Neurite A
GSM4090816
Unaffected iPS Neurite B
GSM4090817
Unaffected iPS Neurite C
GSM4090818
Unaffected iPS Neurite D
GSM4090819
FXS iPS Soma A
GSM4090820
FXS iPS Soma B
GSM4090821
FXS iPS Soma C
GSM4090822
FXS iPS Soma D
GSM4090823
FXS iPS Neurite A
GSM4090824
FXS iPS Neurite B
GSM4090825
FXS iPS Neurite C
GSM4090826
FXS iPS Neurite D
GSM4090827
CAD FMR1KO GFP rescue Soma A
GSM4090828
CAD FMR1KO GFP rescue Soma B
GSM4090829
CAD FMR1KO GFP rescue Soma C
GSM4090830
CAD FMR1KO GFP rescue Neurite A
GSM4090831
CAD FMR1KO GFP rescue Neurite B
GSM4090832
CAD FMR1KO GFP rescue Neurite C
GSM4090833
CAD FMR1KO Fmr1-RGG rescue Soma A
GSM4090834
CAD FMR1KO Fmr1-RGG rescue Soma B
GSM4090835
CAD FMR1KO Fmr1-RGG rescue Soma C
GSM4090836
CAD FMR1KO Fmr1-RGG rescue Neurite A
GSM4090837
CAD FMR1KO Fmr1-RGG rescue Neurite B
GSM4090838
CAD FMR1KO Fmr1-RGG rescue Neurite C
GSM4090839
CAD FMR1KO Fmr1 rescue Soma A
GSM4090840
CAD FMR1KO Fmr1 rescue Soma B
GSM4090841
CAD FMR1KO Fmr1 rescue Soma C
GSM4090842
CAD FMR1KO Fmr1 rescue Neurite A
GSM4090843
CAD FMR1KO Fmr1 rescue Neurite B
GSM4090844
CAD FMR1KO Fmr1 rescue Neurite C
GSM4090845
CAD WT GFP rescue Soma A
GSM4090846
CAD WT GFP rescue Soma B
GSM4090847
CAD WT GFP rescue Soma C
GSM4090848
CAD WT GFP rescue Neurite A
GSM4090849
CAD WT GFP rescue Neurite B
GSM4090850
CAD WT GFP rescue Neurite C
GSM4090851
CAD WT RiboFoot RNA A
GSM4090852
CAD WT RiboFoot RNA B
GSM4090853
CAD WT RiboFoot RNA C
GSM4090854
CAD WT RiboFoot RFP A
GSM4090855
CAD WT RiboFoot RFP B
GSM4090856
CAD WT RiboFoot RFP C
GSM4090857
CAD KO RiboFoot RNA A
GSM4090858
CAD KO RiboFoot RNA B
GSM4090859
CAD KO RiboFoot RNA C
GSM4090860
CAD KO RiboFoot RFP A
GSM4090861
CAD KO RiboFoot RFP B
GSM4090862
CAD KO RiboFoot RFP C
GSM4432580
CAD I304N Soma A
GSM4432581
CAD I304N Soma B
GSM4432582
CAD I304N Soma C
GSM4432583
CAD I304N Neurite A
GSM4432584
CAD I304N Neurite B
GSM4432585
CAD I304N Neurite C
Relations
BioProject
PRJNA573700
SRA
SRP223004
Download family
Format
SOFT formatted family file(s)
SOFT
MINiML formatted family file(s)
MINiML
Series Matrix File(s)
TXT
Supplementary file
Size
Download
File type/resource
GSE137878_RAW.tar
116.2 Mb
(http)
(custom)
TAR (of TXT)
SRA Run Selector
Raw data are available in SRA
Processed data provided as supplementary file
|
NLM
|
NIH
|
GEO Help
|
Disclaimer
|
Accessibility
|