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GEO accession:
Series GSE137376
Query DataSets for GSE137376
Status
Public on Mar 14, 2020
Title
Alteration of genome folding via engineered transposon insertion
Organism
Homo sapiens
Experiment type
Expression profiling by high throughput sequencing
Genome binding/occupancy profiling by high throughput sequencing
Other
Summary
This SuperSeries is composed of the SubSeries listed below.
Overall design
Refer to individual Series
Citation(s)
32868908
Submission date
Sep 12, 2019
Last update date
Nov 24, 2020
Contact name
Ross Hardison
E-mail(s)
rch8@psu.edu
Organization name
Pennsylvania State University
Street address
303 Wartik Lab
City
University Park
State/province
PA
ZIP/Postal code
16802
Country
USA
Platforms (1)
GPL18573
Illumina NextSeq 500 (Homo sapiens)
Samples (113)
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GSM4077743
Insertion-site-mapping-Clone21
GSM4077744
Insertion-site-mapping-Clone25
GSM4077745
Hi-C-WT-rep1-pilot-seq
GSM4077746
Hi-C-WT-rep2-pilot-seq
GSM4077747
Hi-C-Clone21-rep1-pilot-seq
GSM4077748
Hi-C-Clone21-rep2-pilot-seq
GSM4077749
Hi-C-Clone25-rep1-pilot-seq
GSM4077750
Hi-C-Clone25-rep2-pilot-seq
GSM4077751
Hi-C-WT-rep1-deeper-seq
GSM4077752
Hi-C-WT-rep2-deeper-seq
GSM4077753
Hi-C-Clone21-rep1-deeper-seq
GSM4077754
Hi-C-Clone21-rep2-deeper-seq
GSM4077755
Hi-C-Clone25-rep1-deeper-seq
GSM4077756
Hi-C-Clone25-rep2-deeper-seq
GSM4077757
Capture-C-WT-rep1
GSM4077758
Capture-C-WT-rep2
GSM4077759
Capture-C-Clone21-rep1
GSM4077760
Capture-C-Clone21-rep2
GSM4077761
Capture-C-Clone25-rep1
GSM4077762
Capture-C-Clone25-rep2
GSM4077763
Capture-C-Clone21-CTCF-CRISPR-rep1
GSM4077764
Capture-C-Clone21-CTCF-CRISPR-rep2
GSM4077765
Capture-C-InsertProbe-Clone25-rep1
GSM4077766
Capture-C-InsertProbe-Clone25-rep2
GSM4077767
Capture-C-InsertProbe-WT-rep1
GSM4077768
Capture-C-InsertProbe-WT-rep2
GSM4077769
RNA-Seq-WT-rep1
GSM4077770
RNA-Seq-WT-rep2
GSM4077771
RNA-Seq-Clone21-rep1
GSM4077772
RNA-Seq-Clone21-rep2
GSM4077773
RNA-Seq-Clone25-rep1
GSM4077774
RNA-Seq-Clone25-rep2
GSM4077775
ChIP-seq-H3K27Ac-WT
GSM4077776
ChIP-seq-H3K27Ac-Clone21
GSM4077777
ChIP-seq-H3K27Ac-Clone25
GSM4077778
Input-for-ChIP-seq
GSM4624626
Hi-C-Clone21-CTCF-CRISPR-rep1-1st-seq
GSM4624627
Hi-C-Clone21-CTCF-CRISPR-rep1-2nd-seq
GSM4624628
Hi-C-Clone21-CTCF-CRISPR-rep1-3rd-seq
GSM4624629
Hi-C-Clone21-CTCF-CRISPR-rep2-1st-seq
GSM4624630
Hi-C-Clone21-CTCF-CRISPR-rep2-2nd-seq
GSM4624631
Hi-C-Clone21-CTCF-CRISPR-rep2-3rd-seq
GSM4624632
Hi-C-Clone21-TSS-CRISPR-rep1-1st-seq
GSM4624633
Hi-C-Clone21-TSS-CRISPR-rep1-2nd-seq
GSM4624634
Hi-C-Clone21-TSS-CRISPR-rep1-3rd-seq
GSM4624635
Hi-C-Clone21-TSS-CRISPR-rep2-1st-seq
GSM4624636
Hi-C-Clone21-TSS-CRISPR-rep2-2nd-seq
GSM4624637
Hi-C-Clone21-TSS-CRISPR-rep2-3rd-seq
GSM4624638
Hi-C-Clone21-CTCF&TSS-CRISPR#1-rep1-1st-seq
GSM4624639
Hi-C-Clone21-CTCF&TSS-CRISPR#1-rep1-2nd-seq
GSM4624640
Hi-C-Clone21-CTCF&TSS-CRISPR#1-rep1-3rd-seq
GSM4624641
Hi-C-Clone21-CTCF&TSS-CRISPR#1-rep2-1st-seq
GSM4624642
Hi-C-Clone21-CTCF&TSS-CRISPR#1-rep2-2nd-seq
GSM4624643
Hi-C-Clone21-CTCF&TSS-CRISPR#1-rep2-3rd-seq
GSM4624644
Hi-C-Clone21-CTCF&TSS-CRISPR#2-rep1-1st-seq
GSM4624645
Hi-C-Clone21-CTCF&TSS-CRISPR#2-rep1-2nd-seq
GSM4624646
Hi-C-Clone21-CTCF&TSS-CRISPR#2-rep2-1st-seq
GSM4624647
Hi-C-Clone21-CTCF&TSS-CRISPR#2-rep2-2nd-seq
GSM4624648
Hi-C-WT-2kb-CRISPR-rep1-1st-seq
GSM4624649
Hi-C-WT-2kb-CRISPR-rep1-2nd-seq
GSM4624650
Hi-C-WT-2kb-CRISPR-rep2-1st-seq
GSM4624651
Hi-C-WT-2kb-CRISPR-rep2-2nd-seq
GSM4624690
Capture-C-Clone21-TSS-CRISPR-1st-rep1-seq
GSM4624691
Capture-C-Clone21-TSS-CRISPR-1st-rep2-seq
GSM4624692
Capture-C-Clone21-CTCF&TSS-CRISPR#1-1st-rep1-seq
GSM4624693
Capture-C-Clone21-CTCF&TSS-CRISPR#1-1st-rep2-seq
GSM4624694
Capture-C-Clone21-TSS-CRISPR-2nd-rep1-seq
GSM4624695
Capture-C-Clone21-TSS-CRISPR-2nd-rep2-seq
GSM4624696
Capture-C-Clone21-CTCF&TSS-CRISPR#1-2nd-rep1-seq
GSM4624697
Capture-C-Clone21-CTCF&TSS-CRISPR#1-2nd-rep2-seq
GSM4625018
ChIP-seq-Clone21-TSS-CRISPR-H3K27Ac
GSM4625019
ChIP-seq-Clone21-CTCF&TSS-CRISPR#1-H3K27Ac
GSM4625020
ChIP-seq-Clone21-CTCF&TSS-CRISPR#2-H3K27Ac
GSM4625021
ChIP-seq-WT-2kb-CRISPR-H3K27Ac
GSM4625022
ChIP-seq-Clone21-CTCF-CRISPR-H3K27Ac
GSM4625023
ChIP-seq-WT-CTCF-rep1
GSM4625024
ChIP-seq-WT-Rad21-rep1
GSM4625025
ChIP-seq-WT-CTCF-rep2
GSM4625026
ChIP-seq-WT-Rad21-rep2
GSM4625027
ChIP-seq-Clone21-CTCF-rep1
GSM4625028
ChIP-seq-Clone21-Rad21-rep1
GSM4625029
ChIP-seq-Clone21-CTCF-rep2
GSM4625030
ChIP-seq-Clone21-Rad21-rep2
GSM4625031
ChIP-seq-Clone25-CTCF-rep1
GSM4625032
ChIP-seq-Clone25-Rad21-rep1
GSM4625033
ChIP-seq-Clone25-CTCF-rep2
GSM4625034
ChIP-seq-Clone25-Rad21-rep2
GSM4625035
ChIP-seq-Clone21-CTCF-CRISPR-CTCF-rep1
GSM4625036
ChIP-seq-Clone21-CTCF-CRISPR-Rad21-rep1
GSM4625037
ChIP-seq-Clone21-CTCF-CRISPR-Rad21-rep2
GSM4625038
ChIP-seq-Clone21-CTCF-CRISPR-CTCF-rep2
GSM4625039
ChIP-seq-Clone21-TSS-CRISPR-CTCF-rep1
GSM4625040
ChIP-seq-Clone21-TSS-CRISPR-Rad21-rep1
GSM4625041
ChIP-seq-Clone21-TSS-CRISPR-CTCF-rep2
GSM4625042
ChIP-seq-Clone21-TSS-CRISPR-Rad21-rep2
GSM4625043
ChIP-seq-Clone21-CTCF&TSS-CRISPR#1-CTCF-rep1
GSM4625044
ChIP-seq-Clone21-CTCF&TSS-CRISPR#1-Rad21-rep1
GSM4625045
ChIP-seq-Clone21-CTCF&TSS-CRISPR#1-CTCF-rep2
GSM4625046
ChIP-seq-Clone21-CTCF&TSS-CRISPR#1-Rad21-rep2
GSM4625047
ChIP-seq-Clone21-CTCF&TSS-CRISPR#2-CTCF-rep1
GSM4625048
ChIP-seq-Clone21-CTCF&TSS-CRISPR#2-Rad21-rep1
GSM4625049
ChIP-seq-Clone21-CTCF&TSS-CRISPR#2-CTCF-rep2
GSM4625050
ChIP-seq-Clone21-CTCF&TSS-CRISPR#2-Rad21-rep2
GSM4625051
ChIP-seq-WT-2kb-CRISPR-CTCF-rep1
GSM4625052
ChIP-seq-WT-2kb-CRISPR-Rad21-rep1
GSM4625053
ChIP-seq-WT-2kb-CRISPR-CTCF-rep2
GSM4625054
ChIP-seq-WT-2kb-CRISPR-Rad21-rep2
GSM4626272
RNA-Seq-Clone21-CTCF-CRISPR-rep1
GSM4626273
RNA-Seq-Clone21-CTCF-CRISPR-rep2
GSM4626274
RNA-Seq-Clone21-TSS-CRISPR-rep1
GSM4626275
RNA-Seq-Clone21-TSS-CRISPR-rep2
GSM4626276
RNA-Seq-Clone21-CTCF&TSS-CRISPR#1-rep1
GSM4626277
RNA-Seq-Clone21-CTCF&TSS-CRISPR#1-rep2
This SuperSeries is composed of the following SubSeries:
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GSE137371
Alteration of genome folding via engineered transposon insertion [Target-enriched sequencing]
GSE137372
Alteration of genome folding via engineered transposon insertion [HiC]
GSE137373
Alteration of genome folding via engineered transposon insertion [CaptureC]
GSE137374
Alteration of genome folding via engineered transposon insertion [RNA-seq]
GSE137375
Alteration of genome folding via engineered transposon insertion [H3K27Ac ChIP-seq]
GSE152721
Alteration of genome folding via engineered transposon insertion [CTCF RAD21 ChIP-seq]
Relations
BioProject
PRJNA565254
Download family
Format
SOFT formatted family file(s)
SOFT
MINiML formatted family file(s)
MINiML
Series Matrix File(s)
TXT
Supplementary file
Size
Download
File type/resource
GSE137376_RAW.tar
164.4 Gb
(http)
(custom)
TAR (of BROADPEAK, BW, TXT)
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