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Series GSE136899 Query DataSets for GSE136899
Status Public on Sep 04, 2020
Title Radiation-Induced DNA Damage and Repair Effects on 3D Genome Organization
Organism Homo sapiens
Experiment type Other
Summary We investigate the impact of DNA damage response and repair on 3D genome folding using Hi-C experiments on wild type cells and ataxia telangiectasia mutated (ATM) patient cells. Fibroblasts, lymphoblasts, and ATM-deficient fibroblasts were irradiated with 5 Gy X-rays and Hi-C was performed after 30 minutes, 24 hours, or 5 days after irradiation.
Overall design Examination of the effects of X-rays on 6 different cell types
Contributor(s) Sanders JT, Freeman TF, Xu Y, Golloshi R, Stallard MA, Hill AM, Martin RS, Balajee A, McCord RP
Citation(s) 33268790
Submission date Sep 05, 2019
Last update date Oct 03, 2021
Contact name Rachel Patton McCord
Phone 8659743149
Organization name University of Tennessee,Knoxville
Department BCMB
Street address 1311 Cumberland Ave
City Knoxville
State/province TN
ZIP/Postal code 37916
Country USA
Platforms (2)
GPL21290 Illumina HiSeq 3000 (Homo sapiens)
GPL24676 Illumina NovaSeq 6000 (Homo sapiens)
Samples (26)
GSM4061345 ATMhTERT_Control_R1_HiC
GSM4061346 ATMhTERT_Control_R2_HiC
GSM4061347 ATMhTERT_24hr_R1_HiC
BioProject PRJNA564008
SRA SRP220427

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE136899_RAW.tar 7.5 Gb (http)(custom) TAR (of TAR)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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