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Series GSE136844 Query DataSets for GSE136844
Status Public on Jan 17, 2021
Title LINE-1 promoter methylation analysis in brain development
Organism Mus musculus
Experiment type Methylation profiling by high throughput sequencing
Summary We performed methylation analisys of L1MdTf sequence and IAPLTR1a during mouse brain development, in cortex, hippocampus and cerebellum at different developmental stages (E15.5, E18.5, P0, P3, P14). We defined specific waves of methylation for L1MdTf promoter.
Overall design Bisulfite conversion based methylation analysis of L1MdTf and IAPLTR1a elements during mouse brain development. We analyzed cerebellum, cortex and hippocampus at 5 different developmental stages E15.5, E18.5, P0, P3 and P14. 4 mice at each developmental stage were analyzed.
Contributor(s) Bodega B, Fumagalli M
Citation(s) 33541338
Submission date Sep 04, 2019
Last update date Feb 16, 2021
Contact name Beatrice Bodega
Organization name INGM Istituto Nazionale Genetica Molecolare
Street address Via Francesco Sforza 35
City Milan
ZIP/Postal code 20122
Country Italy
Platforms (1)
GPL24247 Illumina NovaSeq 6000 (Mus musculus)
Samples (120)
GSM4059169 IAP_Cerebellum_1_E15.5
GSM4059170 IAP_Cerebellum_1_E18.5
GSM4059171 IAP_Cerebellum_1_P0
BioProject PRJNA563846
SRA SRP220293

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Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE136844_RAW.tar 130.0 Kb (http)(custom) TAR (of BEDGRAPH)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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